Detailed information NTG0066610

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R11_RS04865
• Genome accession: NZ_AP022177
• Coordinates: 1014412..1015404 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP7-S17-ESBL-04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1009412..1020404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R11_RS04835 (WP7S17E04_09540)	ispD	1009473..1010183 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7R11_RS04840 (WP7S17E04_09550)	ispF	1010183..1010662 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R11_RS04845 (WP7S17E04_09560)	truD	1010659..1011708 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
H7R11_RS04850 (WP7S17E04_09570)	surE	1011689..1012450 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R11_RS04855 (WP7S17E04_09580)	pcm	1012444..1013070 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7R11_RS04860 (WP7S17E04_09590)	nlpD	1013255..1014349 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H7R11_RS04865 (WP7S17E04_09600)	rpoS	1014412..1015404 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7R11_RS04870 (WP7S17E04_09610)	ygbN	1015498..1016862 (-)	1365	WP_000104459.1	GntP family transporter	-
H7R11_RS04875 (WP7S17E04_09620)	ygbM	1016951..1017727 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
H7R11_RS04880 (WP7S17E04_09630)	ygbL	1017732..1018370 (-)	639	WP_001278994.1	aldolase	-
H7R11_RS04885 (WP7S17E04_09640)	otnK	1018367..1019629 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=66610 H7R11_RS04865 WP_000081550.1 1014412..1015404(+) (rpoS) [Escherichia coli strain WP7-S17-ESBL-04]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=66610 H7R11_RS04865 WP_000081550.1 1014412..1015404(+) (rpoS) [Escherichia coli strain WP7-S17-ESBL-04]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715