Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MN200_RS13875 Genome accession   NZ_CP093968
Coordinates   2851594..2852451 (-) Length   285 a.a.
NCBI ID   WP_010327571.1    Uniprot ID   A0AA42M8G5
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2846594..2857451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS13855 (MN200_13855) miaB 2847928..2849385 (+) 1458 WP_010327568.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  MN200_RS13860 (MN200_13860) - 2849424..2850500 (+) 1077 WP_242759667.1 PhoH family protein -
  MN200_RS13865 (MN200_13865) ybeY 2850558..2851037 (+) 480 WP_242759668.1 rRNA maturation RNase YbeY -
  MN200_RS13870 (MN200_13870) - 2851189..2851548 (+) 360 WP_234305135.1 hypothetical protein -
  MN200_RS13875 (MN200_13875) tonB2 2851594..2852451 (-) 858 WP_010327571.1 TonB family protein Machinery gene
  MN200_RS13880 (MN200_13880) - 2852712..2853389 (+) 678 WP_004977854.1 hypothetical protein -
  MN200_RS13885 (MN200_13885) - 2853545..2854255 (+) 711 WP_010327572.1 DUF3108 domain-containing protein -
  MN200_RS13890 (MN200_13890) - 2854346..2854921 (+) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  MN200_RS13895 (MN200_13895) - 2855262..2855735 (-) 474 Protein_2683 IS630 family transposase -
  MN200_RS13900 (MN200_13900) - 2855753..2856100 (-) 348 WP_039890557.1 IS630 transposase-related protein -
  MN200_RS13905 (MN200_13905) - 2856126..2857139 (+) 1014 WP_242759670.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32557.05 Da        Isoelectric Point: 6.0664

>NTDB_id=666097 MN200_RS13875 WP_010327571.1 2851594..2852451(-) (tonB2) [Acinetobacter sp. LUNF3]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEEQPETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDTKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=666097 MN200_RS13875 WP_010327571.1 2851594..2852451(-) (tonB2) [Acinetobacter sp. LUNF3]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACTGTTGTGTTGGCGGTATTTTTGCATCTCGTAAT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTGACTTTGCGTCCTTCAGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAGGGTTCAGGGACTTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAAGAGCAGCCTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTGATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAGATGAACAGCCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTGCAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATGTTTCGGCAGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAGTTTTATGGCAACCGTTACTACCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGTATCCGTGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGTAAGGCTGCACCATTCGGTGGATTTGATACCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.929

98.246

0.726