Detailed information NTG0666096

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG504_RS30830
• Genome accession: NZ_CP108733
• Coordinates: 6878556..6879554 (+)
• Length: 332 a.a.
• NCBI ID: WP_405992724.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00986
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6873556..6884554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG504_RS30805 (OG504_30790)	-	6873907..6874551 (+)	645	WP_405992720.1	TetR/AcrR family transcriptional regulator	-
OG504_RS30810 (OG504_30795)	-	6874682..6876241 (+)	1560	WP_405992721.1	MFS transporter	-
OG504_RS30815 (OG504_30800)	-	6876353..6876880 (-)	528	WP_033285689.1	MarR family winged helix-turn-helix transcriptional regulator	-
OG504_RS30820 (OG504_30805)	-	6877004..6877807 (+)	804	WP_405992722.1	dioxygenase	-
OG504_RS30825 (OG504_30810)	-	6877812..6878342 (-)	531	WP_405992723.1	GNAT family N-acetyltransferase	-
OG504_RS30830 (OG504_30815)	rpoS	6878556..6879554 (+)	999	WP_405992724.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OG504_RS30835 (OG504_30820)	-	6879996..6880760 (+)	765	WP_405992725.1	TetR/AcrR family transcriptional regulator	-
OG504_RS30840 (OG504_30825)	-	6880786..6881766 (-)	981	WP_405992726.1	helix-turn-helix transcriptional regulator	-
OG504_RS30845 (OG504_30830)	-	6881869..6883389 (+)	1521	WP_405992727.1	MFS transporter	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37174.93 Da
• Isoelectric Point: 5.5626

>NTDB_id=666096 OG504_RS30830 WP_405992724.1 6878556..6879554(+) (rpoS) [Streptomyces sp. NBC_00986]
MATRAVARRKSASGETSGVARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGEEKSQAD
ASHAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDTTPERVTNVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGMEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide

• Length: 999 bp

>NTDB_id=666096 OG504_RS30830 WP_405992724.1 6878556..6879554(+) (rpoS) [Streptomyces sp. NBC_00986]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCTCCGGCGAGACCTCCGGCGTGGCGCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGCACACCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCACAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTCCTCGAGGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCACGCCGAGCTGGAGGCCCTGGTCGCCGAGGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGCCTGCCCGTCCACCTCGTGGAGGAGCTGGGCCGGATCCGCCGGGT
GCAGCGCGAGTTCAACCGCAAGAACGGGCGGGAGCCCGAACACGCGGAGATCGCGGCCGAGTTGGACACCACCCCGGAGC
GCGTGACGAACGTCCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGAGACACCCAGTTC
GGTGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATGGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTGACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCACTGCTGGAACTGAAG
AAGCTGGCCAGCCAGACCGGCTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364