Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   MN200_RS07325 Genome accession   NZ_CP093968
Coordinates   1492233..1492634 (+) Length   133 a.a.
NCBI ID   WP_058869736.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487233..1497634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS07295 (MN200_07295) kdsB 1488027..1488788 (+) 762 WP_058869741.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MN200_RS07300 (MN200_07300) - 1488808..1489791 (+) 984 WP_058869740.1 DNA polymerase III subunit delta' -
  MN200_RS07305 (MN200_07305) - 1489806..1490147 (+) 342 WP_058869739.1 PilZ domain-containing protein -
  MN200_RS07310 (MN200_07310) - 1490174..1490947 (+) 774 WP_058869738.1 TatD family hydrolase -
  MN200_RS07315 (MN200_07315) - 1490993..1491607 (+) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  MN200_RS07320 (MN200_07320) - 1491620..1492198 (+) 579 WP_242760461.1 type II secretion system protein -
  MN200_RS07325 (MN200_07325) xcpV 1492233..1492634 (+) 402 WP_058869736.1 type II secretion system minor pseudopilin GspI Machinery gene
  MN200_RS07330 (MN200_07330) xcpW 1492631..1493251 (+) 621 WP_004984837.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MN200_RS07335 (MN200_07335) gspK 1493330..1494280 (+) 951 WP_234305021.1 type II secretion system minor pseudopilin GspK -
  MN200_RS07340 (MN200_07340) - 1494403..1494999 (+) 597 WP_004696854.1 6-carboxytetrahydropterin synthase -
  MN200_RS07345 (MN200_07345) ung 1495041..1495754 (+) 714 WP_004696856.1 uracil-DNA glycosylase -
  MN200_RS07350 (MN200_07350) - 1495751..1496872 (+) 1122 WP_242760462.1 enoyl-CoA hydratase/isomerase family protein -
  MN200_RS07355 (MN200_07355) tadA 1496878..1497378 (+) 501 WP_004984825.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14645.73 Da        Isoelectric Point: 9.6943

>NTDB_id=666088 MN200_RS07325 WP_058869736.1 1492233..1492634(+) (xcpV) [Acinetobacter sp. LUNF3]
MKHYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=666088 MN200_RS07325 WP_058869736.1 1492233..1492634(+) (xcpV) [Acinetobacter sp. LUNF3]
ATGAAACATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCACTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCTATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75.214

87.97

0.662