Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OG504_RS24245 | Genome accession | NZ_CP108733 |
| Coordinates | 5499134..5501662 (-) | Length | 842 a.a. |
| NCBI ID | WP_019064247.1 | Uniprot ID | A0ABU4FG08 |
| Organism | Streptomyces sp. NBC_00986 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5494134..5506662
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG504_RS24230 (OG504_24200) | - | 5494302..5494889 (-) | 588 | WP_405991702.1 | M23 family metallopeptidase | - |
| OG504_RS24235 (OG504_24205) | - | 5495348..5495965 (+) | 618 | WP_405991703.1 | HAD family acid phosphatase | - |
| OG504_RS24240 (OG504_24210) | - | 5496013..5499057 (+) | 3045 | WP_405991704.1 | NACHT domain-containing protein | - |
| OG504_RS24245 (OG504_24215) | clpC | 5499134..5501662 (-) | 2529 | WP_019064247.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| OG504_RS24250 (OG504_24220) | - | 5502104..5502751 (+) | 648 | WP_405991705.1 | SCO3374 family protein | - |
| OG504_RS24255 (OG504_24225) | - | 5502730..5503065 (-) | 336 | WP_033286117.1 | Lsr2 family protein | - |
| OG504_RS24260 (OG504_24230) | - | 5503290..5503823 (-) | 534 | WP_019064250.1 | amino-acid N-acetyltransferase | - |
| OG504_RS24265 (OG504_24235) | - | 5503833..5504246 (-) | 414 | WP_078623229.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| OG504_RS24270 (OG504_24240) | - | 5504367..5504546 (-) | 180 | WP_033286119.1 | hypothetical protein | - |
| OG504_RS24275 (OG504_24245) | - | 5504595..5505257 (-) | 663 | WP_405996414.1 | hypothetical protein | - |
| OG504_RS24280 (OG504_24250) | - | 5505858..5506655 (-) | 798 | WP_200680630.1 | type III pantothenate kinase | - |
Sequence
Protein
Download Length: 842 a.a. Molecular weight: 92972.21 Da Isoelectric Point: 5.9371
>NTDB_id=666083 OG504_RS24245 WP_019064247.1 5499134..5501662(-) (clpC) [Streptomyces sp. NBC_00986]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAATGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLT
QEDILKIVDLMVGKVDERLKDRDMGIELSSAAKELLSKKGYDPVLGARPLRRTIQREIEDTLSEKILFGELRPGHIVVVD
VEGEGDAKTFTFRGEEKSALPDVPPIEDAAAGGAGPNLSKEA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAATGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLT
QEDILKIVDLMVGKVDERLKDRDMGIELSSAAKELLSKKGYDPVLGARPLRRTIQREIEDTLSEKILFGELRPGHIVVVD
VEGEGDAKTFTFRGEEKSALPDVPPIEDAAAGGAGPNLSKEA
Nucleotide
Download Length: 2529 bp
>NTDB_id=666083 OG504_RS24245 WP_019064247.1 5499134..5501662(-) (clpC) [Streptomyces sp. NBC_00986]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGTCTCATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGGCAGGGGCAGCAGGCCCCGTCCGGGCACATCCCCTTC
ACTCCTCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACGGAGCA
CATCCTGCTCGGCCTGATCCGTGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCTGATCTCAACCGTG
TGCGGCAGCAGGTGATCCAGCTGCTCTCCGGTTACCAGGGCAAGGAGACCGCCACCGCCGGCGGCCCTGCGGAGGGCACC
CCCTCGACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACGAAGAACAACCCGGTCCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCCCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTGGACCTCGGCGCGCTGGTCGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCGGGTGCCG
CCGAGGGCGCCATCGACGCCGCTTCGATCCTGAAGCCGATGCTGGCCCGCGGTGAGCTGCAGACCATCGGTGCGACGACC
CTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCCGCTCTCGAGCGCCGCTTCCAGCCCATCCAGGTCGCGGAGCCGTC
CCTGCCGCACACCATCGAGATCCTCAAGGGTCTGCGCGACCGGTACGAGGCGCACCACCGTGTCTCCATCACGGACGAGG
CGCTCGTGCAGGCCGCCACGCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGTTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCCGGCGT
CCGCCGCGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCGCTGCGCGACAAGGAGAAGCAGCTCC
TGGCCGCCAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTCGCGACCGCCACCGGCATCCCGGTCTTCAAGCTCACCGAGGAGGAGTCCTCGCGGCTGCTCCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGAAGGACGCCGTCAAGGCGCTCTCGAAGGCGATCCGCCGTACGCGTGCGG
GCCTCAAGGACCCGAAGCGTCCCGGTGGTTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCGAAG
GCCCTGGCGGAGTTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGTCTCTTCGGTTCGCCCCCCGGATACGTGGGCTACGAAGAGGGCGGCCAGCTCACGGAGAAGGTCCGTCGCAAGC
CGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATCTTCAACAGCCTTCTCCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTTGGAACCCG
TGACATCTCGAAGGGCTTCAACCTGGGCTTCGCGGCCACGGGTGACACGAAGTCCAACTACGAGCGCATGAAGAACAAGG
TCTCGGACGAGCTCAAGCAGCACTTCCGGCCCGAGTTCCTCAACCGTGTCGACGACGTCGTCGTCTTCCCGCAGCTCACG
CAGGAGGACATCCTCAAGATCGTCGACCTGATGGTCGGCAAGGTGGACGAGCGCCTCAAGGACCGGGACATGGGCATCGA
GCTCTCCTCGGCCGCGAAGGAGCTCCTCTCCAAGAAGGGTTACGACCCGGTGCTGGGCGCGCGTCCGCTGCGGCGCACGA
TCCAGCGCGAGATCGAGGACACGCTCTCGGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGTCACATCGTGGTCGTGGAT
GTCGAGGGCGAGGGCGACGCCAAGACCTTCACCTTCCGGGGTGAGGAGAAGTCGGCGCTTCCCGACGTTCCGCCGATCGA
GGATGCCGCTGCTGGTGGCGCGGGTCCGAATTTGAGCAAGGAGGCGTAA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGTCTCATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGGCAGGGGCAGCAGGCCCCGTCCGGGCACATCCCCTTC
ACTCCTCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACGGAGCA
CATCCTGCTCGGCCTGATCCGTGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCTGATCTCAACCGTG
TGCGGCAGCAGGTGATCCAGCTGCTCTCCGGTTACCAGGGCAAGGAGACCGCCACCGCCGGCGGCCCTGCGGAGGGCACC
CCCTCGACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACGAAGAACAACCCGGTCCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCCCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTGGACCTCGGCGCGCTGGTCGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCGGGTGCCG
CCGAGGGCGCCATCGACGCCGCTTCGATCCTGAAGCCGATGCTGGCCCGCGGTGAGCTGCAGACCATCGGTGCGACGACC
CTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCCGCTCTCGAGCGCCGCTTCCAGCCCATCCAGGTCGCGGAGCCGTC
CCTGCCGCACACCATCGAGATCCTCAAGGGTCTGCGCGACCGGTACGAGGCGCACCACCGTGTCTCCATCACGGACGAGG
CGCTCGTGCAGGCCGCCACGCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGTTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCCGGCGT
CCGCCGCGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCGCTGCGCGACAAGGAGAAGCAGCTCC
TGGCCGCCAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTCGCGACCGCCACCGGCATCCCGGTCTTCAAGCTCACCGAGGAGGAGTCCTCGCGGCTGCTCCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGAAGGACGCCGTCAAGGCGCTCTCGAAGGCGATCCGCCGTACGCGTGCGG
GCCTCAAGGACCCGAAGCGTCCCGGTGGTTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCGAAG
GCCCTGGCGGAGTTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGTCTCTTCGGTTCGCCCCCCGGATACGTGGGCTACGAAGAGGGCGGCCAGCTCACGGAGAAGGTCCGTCGCAAGC
CGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATCTTCAACAGCCTTCTCCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTTGGAACCCG
TGACATCTCGAAGGGCTTCAACCTGGGCTTCGCGGCCACGGGTGACACGAAGTCCAACTACGAGCGCATGAAGAACAAGG
TCTCGGACGAGCTCAAGCAGCACTTCCGGCCCGAGTTCCTCAACCGTGTCGACGACGTCGTCGTCTTCCCGCAGCTCACG
CAGGAGGACATCCTCAAGATCGTCGACCTGATGGTCGGCAAGGTGGACGAGCGCCTCAAGGACCGGGACATGGGCATCGA
GCTCTCCTCGGCCGCGAAGGAGCTCCTCTCCAAGAAGGGTTACGACCCGGTGCTGGGCGCGCGTCCGCTGCGGCGCACGA
TCCAGCGCGAGATCGAGGACACGCTCTCGGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGTCACATCGTGGTCGTGGAT
GTCGAGGGCGAGGGCGACGCCAAGACCTTCACCTTCCGGGGTGAGGAGAAGTCGGCGCTTCCCGACGTTCCGCCGATCGA
GGATGCCGCTGCTGGTGGCGCGGGTCCGAATTTGAGCAAGGAGGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.605 |
96.2 |
0.593 |
| clpC | Streptococcus mutans UA159 |
44.337 |
98.575 |
0.437 |
| clpC | Streptococcus thermophilus LMD-9 |
43.266 |
99.644 |
0.431 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.095 |
99.762 |
0.43 |
| clpC | Streptococcus pneumoniae Rx1 |
44.114 |
95.843 |
0.423 |
| clpC | Streptococcus pneumoniae D39 |
44.114 |
95.843 |
0.423 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.704 |
96.2 |
0.42 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.866 |
95.843 |
0.42 |
| clpE | Streptococcus mutans UA159 |
53.994 |
74.347 |
0.401 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.358 |
75.534 |
0.395 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
53.387 |
73.634 |
0.393 |
| clpE | Streptococcus pneumoniae Rx1 |
52.809 |
73.99 |
0.391 |
| clpE | Streptococcus pneumoniae R6 |
52.809 |
73.99 |
0.391 |
| clpE | Streptococcus pneumoniae D39 |
52.809 |
73.99 |
0.391 |