Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   MN200_RS02045 Genome accession   NZ_CP093968
Coordinates   432171..434393 (-) Length   740 a.a.
NCBI ID   WP_242759999.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427171..439393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS02020 (MN200_02020) - 427205..427561 (-) 357 WP_058868814.1 chaperone modulator CbpM -
  MN200_RS02025 (MN200_02025) - 427572..428525 (-) 954 WP_242759994.1 DnaJ C-terminal domain-containing protein -
  MN200_RS02030 (MN200_02030) - 428669..429121 (-) 453 WP_242759995.1 DUF2147 domain-containing protein -
  MN200_RS02035 (MN200_02035) - 429321..430196 (-) 876 WP_004692657.1 Hsp33 family molecular chaperone HslO -
  MN200_RS02040 (MN200_02040) - 430247..432088 (-) 1842 WP_242759997.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  MN200_RS02045 (MN200_02045) priA 432171..434393 (-) 2223 WP_242759999.1 primosomal protein N' Machinery gene
  MN200_RS02050 (MN200_02050) gspF 434546..435751 (+) 1206 WP_058868820.1 type II secretion system inner membrane protein GspF -
  MN200_RS02055 (MN200_02055) gspG 435785..436222 (+) 438 WP_058868821.1 type II secretion system major pseudopilin GspG -
  MN200_RS02060 (MN200_02060) - 436506..436841 (+) 336 WP_058868822.1 hypothetical protein -
  MN200_RS02065 (MN200_02065) - 437003..437341 (+) 339 WP_058868823.1 tRNA-binding protein -
  MN200_RS02070 (MN200_02070) lnt 437408..438967 (-) 1560 WP_131229892.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84292.19 Da        Isoelectric Point: 8.7882

>NTDB_id=666078 MN200_RS02045 WP_242759999.1 432171..434393(-) (priA) [Acinetobacter sp. LUNF3]
MPENTLSTTQSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQELFPNFEVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHVQVLRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=666078 MN200_RS02045 WP_242759999.1 432171..434393(-) (priA) [Acinetobacter sp. LUNF3]
ATGCCAGAAAATACACTTTCCACCACACAAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCGATTGGTGA
AGTGATGCATGCCGCTTTACCCAGCTTTTTACGCCAAGGCAAACCTTATAATCTACTGGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTAAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACCGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAGGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAGCCATGACACTGGCGCAAATGCCCCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGCTCGTCATAGCTACCATGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTATTTACAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTCTTGGTATTAGTGCCTGAAATTGGCCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAAAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACCCCTCTT
CCGCATCTGGGTTTGATTGTCTTAGATGAAGAGCATGACTTATCTTTCAAGCAACAAGAGGGCTTCCGTTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCGGCAACGCCAAGTATCGACAGTTATG
CACTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTAGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTCTTAAATCGTCGTGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCCCACTGCGATGCCAATTTTACCGTACATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGCGGCACCATTCAC
CGCATGCCTGAACACTGCCCGCAATGTCAGCATAGCGAACTAAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGAACTGTTCCCCAACTTTGAAGTAATTCGGGTGGATCGTGACTCGACCAGTCGAGTCGGCAGCTGGCAAAAAA
TCTATAACAAAATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCAATTTTAGACATCGACTCGGGCTTACTCAGTGTAGACTTTCGTGCCACAGAACGTACCGCACAACT
CATCATCCAAGTCGCGGGACGTGCAGGGCGCGGCGAGAAAAAAGGCGAGGTCTATTTACAAACTTTACGTCCAGACCACC
CTTTGCTGAATACCCTGTTGGAGTCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGT
ACAAGTACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTATTACTGTCCAAAGATCGGGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGCATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709