Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MN200_RS01495 Genome accession   NZ_CP093968
Coordinates   312865..313212 (+) Length   115 a.a.
NCBI ID   WP_171056712.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 307865..318212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS01470 (MN200_01470) hemC 308552..309472 (+) 921 WP_242759949.1 hydroxymethylbilane synthase -
  MN200_RS01475 (MN200_01475) - 309485..310264 (+) 780 WP_242759951.1 uroporphyrinogen-III synthase -
  MN200_RS01480 (MN200_01480) - 310261..311103 (+) 843 WP_242759952.1 hypothetical protein -
  MN200_RS01485 (MN200_01485) - 311108..312301 (+) 1194 WP_242759953.1 heme biosynthesis protein HemY -
  MN200_RS01490 (MN200_01490) - 312309..312737 (+) 429 WP_058868750.1 thioesterase family protein -
  MN200_RS01495 (MN200_01495) hns 312865..313212 (+) 348 WP_171056712.1 H-NS histone family protein Regulator
  MN200_RS01500 (MN200_01500) gspN 313410..314120 (+) 711 WP_058868751.1 type II secretion system protein N -
  MN200_RS01505 (MN200_01505) - 314120..314944 (+) 825 WP_242759954.1 type II secretion system protein N -
  MN200_RS01510 (MN200_01510) gspD 314984..317341 (+) 2358 WP_114392533.1 type II secretion system secretin GspD -
  MN200_RS01515 (MN200_01515) - 317428..318171 (+) 744 WP_114392530.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12852.75 Da        Isoelectric Point: 9.5383

>NTDB_id=666074 MN200_RS01495 WP_171056712.1 312865..313212(+) (hns) [Acinetobacter sp. LUNF3]
MLVNGVNVMPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRY
RNKGNAAETWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 348 bp        

>NTDB_id=666074 MN200_RS01495 WP_171056712.1 312865..313212(+) (hns) [Acinetobacter sp. LUNF3]
ATGTTGGTTAATGGAGTTAATGTAATGCCAGATATTAGTAATTTGTCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGC
GGAAGCTTTAATTGCATCTAAAAAAGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAG
GCTTAAGCATTGAACAAATTTTAGAGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTAC
CGTAACAAAGGCAATGCTGCTGAGACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTAGAAAAAGG
TGCGAAGCTTGAAGATTTTCTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(19-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

92.174

0.8