Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MN200_RS01350 Genome accession   NZ_CP093968
Coordinates   281986..283554 (-) Length   522 a.a.
NCBI ID   WP_242759940.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 276986..288554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS01335 (MN200_01335) gpmI 277803..279350 (+) 1548 WP_131229850.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MN200_RS01340 (MN200_01340) - 279369..280544 (+) 1176 WP_131229852.1 S41 family peptidase -
  MN200_RS01345 (MN200_01345) pilR 280549..281970 (-) 1422 WP_242759939.1 sigma-54 dependent transcriptional regulator Regulator
  MN200_RS01350 (MN200_01350) pilS 281986..283554 (-) 1569 WP_242759940.1 ATP-binding protein Regulator
  MN200_RS01355 (MN200_01355) - 283576..284211 (-) 636 WP_010325697.1 response regulator -
  MN200_RS01360 (MN200_01360) - 284427..285482 (+) 1056 WP_125273423.1 serine hydrolase -
  MN200_RS01365 (MN200_01365) thrC 285569..286708 (-) 1140 WP_242759941.1 threonine synthase -
  MN200_RS01370 (MN200_01370) - 286774..288078 (-) 1305 WP_131229857.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59634.30 Da        Isoelectric Point: 6.8832

>NTDB_id=666072 MN200_RS01350 WP_242759940.1 281986..283554(-) (pilS) [Acinetobacter sp. LUNF3]
MLKYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFLNYQYPVLYRSVLIGFIFISAFQLLSLKNVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPEQALLHNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIIEDLPDVKDQ
IDYRISDPAQIQFDEQQLRQVLINLIRNAIRHNAAEADHIQIRVYSYKNLVHIEVRDFGDGVAKQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=666072 MN200_RS01350 WP_242759940.1 281986..283554(-) (pilS) [Acinetobacter sp. LUNF3]
ATGCTGAAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCATCGTATCGACTGTTTATTGG
TTGCTGTTTGTTGTTGGTTTATCTGCTGACTTATGAGCAGCTATTTTTAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCTTTTCAGCTATTGAGCCTCAAGAATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCAAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCAGTGA
TTACACTGGTTTATCAACACTTTATTGGAACGCTCTTTTCAATCAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCGGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAGCTAGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCCTGTGCATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TATCCCTTATATAAGGCACAGCCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAGAATGGGGAAAAATTCCAATT
TACATCCCAACTGAGCCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCCCATGAAATTCGCAATCCATTGGCTGCCATCACCCAAGCCAATGAATTGATGCAGGTGAACGATCCTGAGCAAGCCCT
GTTACATAACATGATCGCCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCATTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCCAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAACGCCATTCGGCATAATGCAGCTGAAGCCGATCACATTCAAATTCGTGTCTATAGCTATAAAAACCTCGTCCATATTG
AGGTCCGCGATTTTGGTGATGGGGTCGCCAAACAGGATCAAACCGCCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.63

97.318

0.59