Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   OG355_RS37560 Genome accession   NZ_CP108731
Coordinates   8396637..8396996 (+) Length   119 a.a.
NCBI ID   WP_406004699.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00987     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 8391637..8401996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG355_RS37525 (OG355_37535) - 8392043..8392465 (+) 423 WP_124720391.1 cupin domain-containing protein -
  OG355_RS37530 (OG355_37540) - 8392635..8392958 (+) 324 WP_241196607.1 hypothetical protein -
  OG355_RS37535 (OG355_37545) - 8393043..8394206 (+) 1164 WP_266488458.1 epoxide hydrolase family protein -
  OG355_RS37540 (OG355_37550) - 8394306..8394704 (-) 399 WP_124720389.1 hypothetical protein -
  OG355_RS37545 (OG355_37555) - 8394973..8395509 (+) 537 WP_124720388.1 hypothetical protein -
  OG355_RS37550 - 8395675..8396286 (+) 612 Protein_7420 hypothetical protein -
  OG355_RS37555 - 8396382..8396459 (+) 78 Protein_7421 hypothetical protein -
  OG355_RS37560 (OG355_37565) micB 8396637..8396996 (+) 360 WP_406004699.1 sensor histidine kinase Regulator
  OG355_RS37565 (OG355_37570) - 8397006..8397455 (+) 450 WP_124720387.1 NUDIX hydrolase -
  OG355_RS37570 (OG355_37580) - 8397616..8398002 (+) 387 WP_124720386.1 VOC family protein -
  OG355_RS37575 (OG355_37585) - 8398355..8398747 (+) 393 WP_124720385.1 SAV_915 family protein -
  OG355_RS37580 (OG355_37590) lysA 8398759..8400132 (+) 1374 WP_266488446.1 diaminopimelate decarboxylase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12862.51 Da        Isoelectric Point: 9.4596

>NTDB_id=666029 OG355_RS37560 WP_406004699.1 8396637..8396996(+) (micB) [Streptomyces sp. NBC_00987]
MSGDEDALARVVRNLLDNALRHAATRIDVSLRTLHGTARLVVADDGPGIPAADRERVFDRFTRLDDARARDTGGSGLGLA
IVRDIVTAHHGSTHIEDNRPGTRLIVVLPVEGRIARASR

Nucleotide


Download         Length: 360 bp        

>NTDB_id=666029 OG355_RS37560 WP_406004699.1 8396637..8396996(+) (micB) [Streptomyces sp. NBC_00987]
GTGAGCGGGGACGAGGACGCCCTCGCCCGAGTTGTGCGCAACCTCCTGGACAACGCGCTGCGCCATGCCGCGACCCGCAT
CGACGTCAGCCTCCGTACCCTGCACGGCACCGCACGACTGGTCGTCGCCGACGACGGCCCCGGTATCCCCGCGGCGGACC
GGGAGCGCGTCTTCGACCGGTTCACCCGCCTGGACGACGCCCGCGCCCGGGACACCGGCGGCAGCGGGCTCGGCCTCGCC
ATCGTCCGCGACATCGTCACGGCCCACCACGGCAGCACCCACATCGAGGACAACCGGCCGGGCACCCGGCTGATCGTCGT
GCTGCCGGTCGAGGGGCGGATCGCGCGGGCGTCCCGGTAG

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

37.719

95.798

0.361