Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG355_RS30875 Genome accession   NZ_CP108731
Coordinates   6870588..6871382 (-) Length   264 a.a.
NCBI ID   WP_124720948.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00987     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6865588..6876382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG355_RS30860 (OG355_30865) - 6865732..6866547 (+) 816 WP_124720945.1 GNAT family N-acetyltransferase -
  OG355_RS30865 (OG355_30870) - 6866608..6868497 (+) 1890 WP_124720946.1 IucA/IucC family siderophore biosynthesis protein -
  OG355_RS30870 (OG355_30875) - 6868535..6870505 (+) 1971 WP_124720947.1 ATP-dependent DNA helicase -
  OG355_RS30875 (OG355_30880) dinR/lexA 6870588..6871382 (-) 795 WP_124720948.1 transcriptional repressor LexA Regulator
  OG355_RS30880 (OG355_30885) nrdR 6871903..6872415 (+) 513 WP_124720949.1 transcriptional regulator NrdR -
  OG355_RS30885 (OG355_30890) - 6872576..6875470 (+) 2895 WP_124720950.1 vitamin B12-dependent ribonucleotide reductase -
  OG355_RS30890 (OG355_30895) - 6875649..6876092 (+) 444 WP_124720951.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28672.46 Da        Isoelectric Point: 6.9854

>NTDB_id=666017 OG355_RS30875 WP_124720948.1 6870588..6871382(-) (dinR/lexA) [Streptomyces sp. NBC_00987]
MTTTADSAIITAQDRSQSRFEPVHAMNDSVTNMEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=666017 OG355_RS30875 WP_124720948.1 6870588..6871382(-) (dinR/lexA) [Streptomyces sp. NBC_00987]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGATTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACATGGAGGGGCCAGAGCCCGCGCGCCCGGCGCGCTCATTGCCCGGTCGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTGATCCGGGATTCCGTGCAACGGCGTGGATATCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGGTTCCTGCGCCGCGACCCGCACCGTCCGCGGGCGTACGAGGTCCGAGGTTCGGACCAGCCCAGCTCGCAGCCCA
CCGACACGACCGGCAAGCCCGCGGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAACTCGTCGGTGACGGCGAGCTGTTCGTGCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGCGACGGCGACTGGGTCACAGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCGGCCATGCTGGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTCTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCGGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375