Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SCSC_RS08360 Genome accession   NZ_AP014647
Coordinates   1710453..1711871 (-) Length   472 a.a.
NCBI ID   WP_100207697.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1705453..1716871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS08340 (SCSC_1717) - 1706208..1707059 (+) 852 WP_006270601.1 putative RNA methyltransferase -
  SCSC_RS08345 (SCSC_1718) - 1707102..1707782 (-) 681 WP_006268016.1 rhomboid family intramembrane serine protease -
  SCSC_RS08350 (SCSC_1719) - 1707775..1708302 (-) 528 WP_006270600.1 5-formyltetrahydrofolate cyclo-ligase -
  SCSC_RS08355 (SCSC_1720) gltX 1708758..1710215 (-) 1458 WP_006270599.1 glutamate--tRNA ligase -
  SCSC_RS08360 (SCSC_1721) radA 1710453..1711871 (-) 1419 WP_100207697.1 DNA repair protein RadA Machinery gene
  SCSC_RS08365 (SCSC_1722) - 1711831..1712274 (-) 444 WP_006270612.1 dUTP diphosphatase -
  SCSC_RS08370 (SCSC_1723) - 1712368..1713402 (-) 1035 WP_006270610.1 S66 peptidase family protein -
  SCSC_RS08375 (SCSC_1724) - 1713621..1713800 (-) 180 Protein_1630 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SCSC_RS08380 (SCSC_1725) - 1713885..1714901 (+) 1017 WP_006270605.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SCSC_RS08385 (SCSC_1726) galU 1714929..1715828 (+) 900 WP_006270607.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51600.39 Da        Isoelectric Point: 6.1089

>NTDB_id=66594 SCSC_RS08360 WP_100207697.1 1710453..1711871(-) (radA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MVCGQVVLEALGIKKEESIIAKKKATFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEIKNARVSLTGEKSRPMKLAE
VTSINVNRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQSIRAEIEKIKPDFLIVDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEK
PTNPQECYIGEIGLTGEIRRVNRIEQRINEAVKLGFTKIYVPKNSLNGLNIPEKTEVIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=66594 SCSC_RS08360 WP_100207697.1 1710453..1711871(-) (radA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACTGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAGCGACATT
TGTTTGTCAAAATTGTGAATATCATTCCCCCAAGTATCTAGGGCGCTGCCCTAACTGTGGGGCTTGGTCTTCTTTTGTCG
AAGAGGTTGAAGTTACAGAGATTAAGAATGCGCGTGTTTCTCTGACAGGGGAAAAAAGTCGACCGATGAAGTTAGCGGAG
GTGACTTCTATCAATGTCAACCGTACCAAGACAGATATGGATGAATTTAACCGCGTCTTGGGCGGTGGCGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGACCCAGGCATTGGGAAATCTACCCTTTTATTGCAGGTTTCGACCCAACTCTCTCACA
AGGGAACGGTATTGTATGTCAGTGGGGAAGAGTCTGCCGAGCAGATTAAGCTGCGCGCGGAACGTTTAGGGGATATTGAC
AGTGAGTTTTATCTCTATGCTGAGACCAATATGCAGAGTATTCGTGCTGAGATTGAAAAAATTAAACCAGATTTTTTGAT
TGTAGATTCCATTCAGACGATTCTATCGCCAGAAATTTCCAGTGTGCAGGGGTCGGTTTCGCAAGTGCGAGAGGTGACAG
CTGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTGGTCACATGACCAAGGAAGGAACCTTAGCT
GGCCCCCGAACGCTAGAGCACATGGTGGACACAGTGCTTTATTTTGAGGGCGAACGTCAGCACACTTTCCGTATCTTGAG
AGCAGTCAAGAACCGCTTTGGCTCAACCAATGAGATTGGCATTTTTGAAATGCAATCTGGCGGGCTAGTTGAGGTTATCA
ACCCCAGCCAAGTCTTTCTGGAAGAGCGGCTGGACGGCGCGACCGGCTCATCCATCGTCGTGACCATGGAAGGAACGCGG
CCGATTTTAGCAGAGGTACAGGCTTTGGTGACACCGACCATGTTCGGCAATGCCAAGCGAACCACGACTGGTCTAGACTT
TAACCGAGCCAGCCTCATCATGGCTGTTCTGGAAAAACGAGCAGGGCTCCTTCTGCAAAATCAAGATGCTTATCTCAAAT
CAGCTGGTGGTGTGCGCTTAGATGAGCCTGCTATTGATTTAGCAGTAGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAG
CCAACCAACCCTCAAGAATGTTATATTGGCGAAATTGGTCTGACAGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCG
CATCAACGAAGCTGTTAAGTTAGGCTTCACAAAAATTTATGTTCCTAAAAACTCTTTGAACGGATTGAATATTCCCGAAA
AGACTGAAGTTATTGGTGTGACAACGATTGGTGAAGTATTGAAGAAGGTGTTTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)

Subunit ChlI of Mg-chelatase (ChlI)

(381-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

90.949

95.975

0.873
  radA Streptococcus pneumoniae D39

90.949

95.975

0.873
  radA Streptococcus pneumoniae R6

90.949

95.975

0.873
  radA Streptococcus pneumoniae TIGR4

90.949

95.975

0.873
  radA Streptococcus mitis SK321

90.949

95.975

0.873
  radA Streptococcus mitis NCTC 12261

90.728

95.975

0.871
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

96.822

0.595

Multiple sequence alignment