Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG496_RS25395 Genome accession   NZ_CP108730
Coordinates   5590391..5591389 (-) Length   332 a.a.
NCBI ID   WP_366496897.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00988     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5585391..5596389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG496_RS25380 (OG496_25300) - 5586585..5588117 (-) 1533 WP_405972513.1 MFS transporter -
  OG496_RS25385 (OG496_25305) - 5588200..5589180 (+) 981 WP_405972514.1 helix-turn-helix transcriptional regulator -
  OG496_RS25390 (OG496_25310) - 5589206..5589943 (-) 738 WP_399395819.1 TetR/AcrR family transcriptional regulator -
  OG496_RS25395 (OG496_25315) rpoS 5590391..5591389 (-) 999 WP_366496897.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG496_RS25400 (OG496_25320) - 5591572..5592102 (+) 531 WP_405972515.1 GNAT family N-acetyltransferase -
  OG496_RS25405 (OG496_25325) - 5592141..5592944 (-) 804 WP_366496895.1 class III extradiol ring-cleavage dioxygenase -
  OG496_RS25410 (OG496_25330) - 5593067..5593573 (+) 507 WP_366496894.1 MarR family transcriptional regulator -
  OG496_RS25415 (OG496_25335) - 5593686..5595248 (-) 1563 WP_405972516.1 MFS transporter -
  OG496_RS25420 (OG496_25340) - 5595399..5596043 (-) 645 WP_405972517.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37179.95 Da        Isoelectric Point: 5.5847

>NTDB_id=665889 OG496_RS25395 WP_366496897.1 5590391..5591389(-) (rpoS) [Streptomyces sp. NBC_00988]
MATRAVARRKSASGETSGVARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLDGEEKSQAD
ASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELESTPERVTNVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGMEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=665889 OG496_RS25395 WP_366496897.1 5590391..5591389(-) (rpoS) [Streptomyces sp. NBC_00988]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCTCCGGCGAGACCTCCGGCGTGGCGCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGCACACCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCGCAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTCCTCGACGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCGCGCCGAGCTGGAGGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGACT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGCCTGCCCGTCCACCTCGTGGAGGAGCTGGGCCGGATCCGCCGGGT
GCAGCGCGAGTTCAACCGCAAGAACGGGCGGGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTGGAGTCGACCCCGGAGC
GCGTGACCAACGTCCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGAGACACGCAGTTC
GGTGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATGGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTGACGCGCGAGCGCATTCGCCAGATCGAGAAGCACGCACTGCTGGAACTGAAG
AAGCTGGCCAGCCAGACCGGCTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361