Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG496_RS20595 Genome accession   NZ_CP108730
Coordinates   4525826..4527754 (+) Length   642 a.a.
NCBI ID   WP_405971914.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00988     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4520826..4532754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG496_RS20560 (OG496_20500) - 4520925..4521341 (+) 417 WP_405976662.1 PIN domain-containing protein -
  OG496_RS20580 (OG496_20520) - 4522115..4522420 (+) 306 WP_020684218.1 hypothetical protein -
  OG496_RS20585 (OG496_20525) - 4522472..4523929 (+) 1458 WP_366491014.1 FGGY family carbohydrate kinase -
  OG496_RS20590 (OG496_20530) rcrP 4524093..4525826 (+) 1734 WP_405971913.1 ABC transporter ATP-binding protein Regulator
  OG496_RS20595 (OG496_20535) rcrQ 4525826..4527754 (+) 1929 WP_405971914.1 ABC transporter ATP-binding protein Regulator
  OG496_RS20600 (OG496_20540) - 4527826..4529136 (-) 1311 WP_405971915.1 RNA polymerase sigma factor -
  OG496_RS20605 (OG496_20545) dnaG 4529218..4531122 (-) 1905 WP_405971916.1 DNA primase -
  OG496_RS20610 (OG496_20550) - 4531170..4532435 (-) 1266 WP_405971917.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69614.20 Da        Isoelectric Point: 6.2066

>NTDB_id=665877 OG496_RS20595 WP_405971914.1 4525826..4527754(+) (rcrQ) [Streptomyces sp. NBC_00988]
MAGPMGRMMAGTGPDARSMDFKVSGKRLIGQFRPERLTIGILLVCVVISVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLALGTFLVAGLLMAVATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHTLVKVFGRQDESAELFAEQNDALYEAGFKAQFNSGVMQPLMMFISNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQQPDPMPSERPEELRGLVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=665877 OG496_RS20595 WP_405971914.1 4525826..4527754(+) (rcrQ) [Streptomyces sp. NBC_00988]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGTGTCCGGCAAGCG
GCTGATCGGCCAGTTCCGGCCGGAGCGGCTGACCATCGGCATTCTGCTGGTGTGCGTGGTGATCAGCGTCGGCCTGAACG
TGGTCGGCCCGAAGATCCTCGGCAACGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGGACG
ACCAAGGCGCAGGCCCTCCAGGCGATGCGCGACCGCGGCCAGGGCTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCACCTCGGTGGGTCATGTGCTGCTGCTCGCGCTGGGCACGTTCCTGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTGAACCGGACCATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGGCTCCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAAGTGCTGTCGCGCGCGACCAACGACATCGACAA
CATCGGCCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGCTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCATGGCTTCTCGCCCTGGTCGCGCTGGTGACCGTACCGCTGTCGTTCCTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGGAGCTGTTCGCCGAGCAGAACGACGCGCTCTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCATCTCGAACCTCAACTACGTCCTGGTCGCG
GTCGTCGGCGGCCTGCGGGTCGCGTCCGGCTCGCTGTCCATCGGTGACGTGCAGGCCTTCGTCCAGTACTCGCGCCAGTT
CTCCATGCCGCTGACACAGGTCGCGTCGATGGCGAACCTGGTCCAGTCCGGCGTAGCCTCCGCCGAGCGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGCAGCCCGACCCGATGCCGAGCGAACGCCCCGAGGAACTCCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACCACCCTCGTCAACCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTCGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCCGACAACATCGCGTACGGCGCCTCCCGCGAGGTCACGCGCGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGACGGTTACGACACGGTCATCGACGACGAGGGCTCGG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCCCGGGCGTTCCTGTCCGACCCGACGATCCTGGTCCTCGACGAG
GCGACGTCCTCCGTCGACACCCGTACGGAGGTCCTGATCCAGAAGGCCATGGCCAAACTCGCCCATGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTGGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCATGCGGACCTGTTGGCGGCGGATGGCGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCTCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.262

0.385