Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG496_RS20590 Genome accession   NZ_CP108730
Coordinates   4524093..4525826 (+) Length   577 a.a.
NCBI ID   WP_405971913.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00988     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4519093..4530826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG496_RS20560 (OG496_20500) - 4520925..4521341 (+) 417 WP_405976662.1 PIN domain-containing protein -
  OG496_RS20580 (OG496_20520) - 4522115..4522420 (+) 306 WP_020684218.1 hypothetical protein -
  OG496_RS20585 (OG496_20525) - 4522472..4523929 (+) 1458 WP_366491014.1 FGGY family carbohydrate kinase -
  OG496_RS20590 (OG496_20530) rcrP 4524093..4525826 (+) 1734 WP_405971913.1 ABC transporter ATP-binding protein Regulator
  OG496_RS20595 (OG496_20535) rcrQ 4525826..4527754 (+) 1929 WP_405971914.1 ABC transporter ATP-binding protein Regulator
  OG496_RS20600 (OG496_20540) - 4527826..4529136 (-) 1311 WP_405971915.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62715.97 Da        Isoelectric Point: 5.7461

>NTDB_id=665876 OG496_RS20590 WP_405971913.1 4524093..4525826(+) (rcrP) [Streptomyces sp. NBC_00988]
MLIRLLRTYLRPYRKPILLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYFGA
RTASAVGRDIRGAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LIAVVPTLTICVTLIVRRLRPLFRSMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PLAPVTELRRHGHLEVRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDTTDGEVLVDGVDVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=665876 OG496_RS20590 WP_405971913.1 4524093..4525826(+) (rcrP) [Streptomyces sp. NBC_00988]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCCTCCTGCTGGTGCTGCTGCAGTTTCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGTGTGGTGAAGGGTGACACCGGTTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACGGGTGCCGTCTACTTCGGCGCG
CGCACCGCCTCCGCCGTCGGCCGGGACATCCGGGGTGCCATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTGGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTGCTCGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGATCGCGGTGGTGCCGACGCTGACCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTCGACGCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGCAAGGCCAACAGCGATCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCGCATCGCATCGCGAGCGG
CGGCATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGACACCGAGTCCAGTGTCGTGCCG
CCGCTCGCGCCCGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGGTCCGCGGGGTCGGCTTCTGCTACCCGGGCGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGAA
AGTCCACCCTTCTGAGTCTGGTCCCGCGCCTGGTTGACACGACCGACGGTGAGGTCCTCGTCGACGGTGTCGACGTGTCG
ACCATCGACCCGGTGCTGCTGGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCGACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGGCTGGACTCCCCCATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCTCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACGATCA
GGGACGCGGACCGGATCGTCGTACTCGACGAGGGACGGGTCGTGGGGACGGGGCGCCATCACGAACTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTTCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.071

100

0.393