Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG714_RS31915 Genome accession   NZ_CP108728
Coordinates   7154315..7155358 (-) Length   347 a.a.
NCBI ID   WP_406126175.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00989     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7149315..7160358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG714_RS31890 (OG714_31860) - 7149581..7150282 (-) 702 WP_406126167.1 hypothetical protein -
  OG714_RS31895 (OG714_31865) - 7150535..7150687 (+) 153 WP_406126168.1 hypothetical protein -
  OG714_RS31900 (OG714_31870) hutH 7150696..7152228 (-) 1533 WP_406126170.1 histidine ammonia-lyase -
  OG714_RS31905 (OG714_31875) - 7152396..7152548 (-) 153 WP_406126172.1 hypothetical protein -
  OG714_RS31910 (OG714_31880) - 7152761..7154185 (-) 1425 WP_406126174.1 GH1 family beta-glucosidase -
  OG714_RS31915 (OG714_31885) cytR 7154315..7155358 (-) 1044 WP_406126175.1 LacI family DNA-binding transcriptional regulator Regulator
  OG714_RS31920 (OG714_31890) - 7155851..7157173 (+) 1323 WP_406126176.1 ABC transporter substrate-binding protein -
  OG714_RS31925 (OG714_31895) - 7157462..7158454 (+) 993 WP_406126178.1 carbohydrate ABC transporter permease -
  OG714_RS31930 (OG714_31900) - 7158469..7159386 (+) 918 WP_406126180.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37141.26 Da        Isoelectric Point: 6.8436

>NTDB_id=665795 OG714_RS31915 WP_406126175.1 7154315..7155358(-) (cytR) [Streptomyces sp. NBC_00989]
MSPAEQPPPRADVRRPTLNAVAALAGVGRGTVSRVINGSPKVSDHARAAVERAIDELGYVPNPAARSLATRRTDSVAVVV
PEGEDRLFSEPYFSGIIRGISAQLASAQMQLLLVLTPDEKEYARLAGYLSAHRVDGVLILAVHSGDTLPDRLRELAVPTV
LAGRRGHGEPLVHVRADNNGGARIAVQHLLAKGRRTIGTITGPLDMDAAQARLDGYREALQGAGITVDEDLIAYGDFREE
GGRAAMRELLHRRPGLDAVFAASDVMASGAVLELRASGRRVPHDVAVVGFDDSIVARHIDPPLTSVRQPLEEMGRTMASL
LLDEIARRGDGHREVVLPTQLVVRESA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=665795 OG714_RS31915 WP_406126175.1 7154315..7155358(-) (cytR) [Streptomyces sp. NBC_00989]
ATGAGCCCTGCCGAGCAGCCGCCCCCGCGTGCGGACGTCCGGCGCCCGACCCTCAACGCCGTGGCCGCGCTCGCCGGCGT
CGGCCGCGGCACGGTCTCCCGGGTCATCAACGGCTCCCCCAAGGTGAGCGACCACGCCCGCGCCGCCGTGGAGCGGGCGA
TCGACGAACTCGGCTACGTCCCCAACCCCGCCGCCCGCTCCCTGGCCACCCGCCGTACGGACTCGGTCGCCGTGGTCGTC
CCCGAGGGCGAGGACCGGCTCTTCTCCGAGCCCTACTTCTCGGGGATCATCCGGGGCATCTCGGCCCAACTCGCAAGCGC
CCAGATGCAGTTGCTGCTGGTCCTGACGCCGGACGAGAAGGAGTACGCGCGGCTGGCCGGCTACCTGTCCGCACACCGGG
TGGACGGCGTACTGATCCTCGCGGTCCACAGCGGCGACACGCTGCCCGACCGGCTGCGCGAACTCGCCGTGCCGACCGTG
CTCGCCGGCCGGCGCGGCCACGGGGAGCCGCTGGTGCATGTCCGCGCGGACAACAACGGCGGCGCCAGGATCGCGGTCCA
GCACCTGCTGGCCAAGGGCCGCCGGACCATCGGCACCATCACGGGCCCCCTGGACATGGACGCCGCACAGGCCCGGCTCG
ACGGCTACCGCGAGGCGTTGCAGGGCGCGGGCATCACCGTCGACGAGGACCTGATCGCGTACGGCGACTTCCGGGAGGAG
GGCGGACGCGCGGCCATGCGGGAGCTGCTGCACCGGCGGCCCGGCCTCGACGCCGTCTTCGCCGCGTCCGACGTGATGGC
GTCGGGTGCCGTGCTGGAACTGCGCGCGTCGGGCCGGCGGGTGCCCCACGACGTCGCCGTCGTCGGCTTCGACGACTCGA
TCGTGGCCCGGCACATCGATCCCCCGCTGACCAGCGTCCGCCAGCCGCTGGAGGAGATGGGCCGCACCATGGCGAGCCTC
CTGCTGGACGAGATCGCCCGACGCGGCGACGGCCACCGCGAAGTGGTCCTGCCGACGCAGCTGGTGGTGCGGGAGTCGGC
CTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(186-346)

Bacterial regulatory proteins, lacI family (LacI)

(17-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.87

97.406

0.369