Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SCSC_RS07400 Genome accession   NZ_AP014647
Coordinates   1500368..1502128 (-) Length   586 a.a.
NCBI ID   WP_006270213.1    Uniprot ID   A0AAD2SV91
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1495368..1507128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS07375 (SCSC_1515) - 1495811..1496536 (-) 726 WP_006270247.1 GntR family transcriptional regulator -
  SCSC_RS07380 (SCSC_1516) celB 1496570..1497838 (-) 1269 WP_006270312.1 PTS cellobiose transporter subunit IIC -
  SCSC_RS07385 (SCSC_1517) - 1497982..1499379 (+) 1398 WP_006270205.1 glycoside hydrolase family 1 protein -
  SCSC_RS07390 (SCSC_1518) - 1499513..1499833 (-) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  SCSC_RS07395 (SCSC_1519) - 1499844..1500158 (-) 315 WP_006270249.1 PTS cellobiose transporter subunit IIB -
  SCSC_RS07400 (SCSC_1520) rcrQ 1500368..1502128 (-) 1761 WP_006270213.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS07405 (SCSC_1521) rcrP 1502118..1503884 (-) 1767 WP_006270248.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS07410 (SCSC_1522) - 1503877..1504335 (-) 459 WP_006270314.1 MarR family winged helix-turn-helix transcriptional regulator -
  SCSC_RS07415 (SCSC_1523) - 1504506..1505693 (-) 1188 WP_006270250.1 NADH-dependent flavin oxidoreductase -
  SCSC_RS07420 (SCSC_1524) - 1505960..1506370 (-) 411 WP_006268326.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65208.35 Da        Isoelectric Point: 6.5139

>NTDB_id=66575 SCSC_RS07400 WP_006270213.1 1500368..1502128(-) (rcrQ) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MENKKSSLFSQVKPYIKGFQFPLLVAFVGAMLSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYAVGTV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKTFQMLNTNLYSS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLTTLKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMQGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEENGFYADLYNSQFDEEAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=66575 SCSC_RS07400 WP_006270213.1 1500368..1502128(-) (rcrQ) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCCTATATCAAAGGATTTCAGTTTCCATTGCTCGTTGCATT
TGTGGGAGCAATGCTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTTATCACAGAAG
GAATGAGAAGTCGAATTGATCTGAAGGCGATCTCTAATATTGCTCTTTTCTTAGCCGTTTTATATGCGGTGGGTACTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGTCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCGCTGAACCAAAGTTTAGGAACAGTGATTTCATCAAGTTTGCTTCTCATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGTGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTATAATGCTACCGAGGAATCAAAAAAAACCTTTCAAATGCTTAATACGAATCTTTATAGTAGT
ATGTGGAAGTCCCAATTTATTTCTGGAATTATGATGCCGTTAATGATATTTACAGGGAACTTTGGTTATGTGATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACCACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCCGGAAATGGAAAACGATGAGCACAAGTCTCAACAGCTCACAACTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACTGGTGCTGGGAAAACGACGATTGTCAACTTGCTCATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACCATTGATGGTGTTGATACCAAGCAGATGAAACGTTCTGAAGTGCATGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATATGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTAACTATCGCGCGTGCACTTCTTAAGGATGCTCCCTTACTTATCTTGGATGAAGCGAC
TTCATCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGCAAGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTAATTTTGGTCATGCGTGATGGTAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGAGGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.306

99.317

0.708

Multiple sequence alignment