Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MOP87_RS02970 Genome accession   NZ_CP093940
Coordinates   682382..683752 (+) Length   456 a.a.
NCBI ID   WP_023534442.1    Uniprot ID   A0A0S4I6M7
Organism   Pseudomonas sp. I3-I5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 677382..688752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP87_RS02940 (MOP87_02940) cydB 677555..678562 (+) 1008 WP_023534420.1 cytochrome d ubiquinol oxidase subunit II -
  MOP87_RS02945 (MOP87_02945) - 678574..678726 (+) 153 WP_033695023.1 DUF2474 domain-containing protein -
  MOP87_RS02950 (MOP87_02950) - 678802..679926 (-) 1125 WP_197874395.1 methyltransferase -
  MOP87_RS02955 (MOP87_02955) - 680024..680731 (-) 708 WP_197874401.1 autoinducer binding domain-containing protein -
  MOP87_RS02960 (MOP87_02960) - 680937..681713 (+) 777 WP_197874394.1 ferredoxin--NADP reductase -
  MOP87_RS02965 (MOP87_02965) mscL 681792..682202 (-) 411 WP_197874393.1 large-conductance mechanosensitive channel protein MscL -
  MOP87_RS02970 (MOP87_02970) radA 682382..683752 (+) 1371 WP_023534442.1 DNA repair protein RadA Machinery gene
  MOP87_RS02975 (MOP87_02975) - 683815..685332 (-) 1518 WP_027914393.1 nucleobase:cation symporter-2 family protein -
  MOP87_RS02980 (MOP87_02980) - 685595..685960 (-) 366 WP_242810109.1 PilZ domain-containing protein -
  MOP87_RS02985 (MOP87_02985) - 686028..686651 (-) 624 WP_242810110.1 lytic polysaccharide monooxygenase auxiliary activity family 9 protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48784.20 Da        Isoelectric Point: 6.8985

>NTDB_id=665745 MOP87_RS02970 WP_023534442.1 682382..683752(+) (radA) [Pseudomonas sp. I3-I5]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSTGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=665745 MOP87_RS02970 WP_023534442.1 682382..683752(+) (radA) [Pseudomonas sp. I3-I5]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACTTTTCCGAAATGGGCTGGCCAGTGTGGCGAGTG
TGGCGCCTGGAACACGCTGGTCGAAACCATGATCGAGAGCGGCGGCGCCGCAGCCCCCAGCACGGGCCGCGCCGGCTGGA
CGGGGCAGCAGGCGCAGATCAAGACCCTGGCTGAGGTCAGCGTCGAGGAGATACCGCGCTTCACCACCAGCAGCACCGAG
CTCGACCGTGTGCTGGGCGGTGGCCTGGTCGATGGCTCCGTGGTCTTGATCGGTGGCGACCCTGGGATCGGCAAATCGAC
GATTCTGCTGCAGACCCTGTGCAATATCGCCGTCGGCATGCCGGCGTTGTACGTCACTGGCGAGGAATCCCAGCAGCAGG
TGGCTATGCGCTCCCGGCGTCTGGGCCTTCCCCAGGACCAGCTCAAGGTCATGACCGAAACCTGCATCGAAACCATCATC
GCCACCGCCCGTCAGGAAAAGCCACGGGTAATGGTGATCGACTCCATCCAGACCATTTTCACCGAACAGTTGCAATCCGC
CCCGGGCGGGGTGGCGCAGGTGCGTGAAAGTACGGCGCTGCTGGTGCGTTATGCCAAGCAAAGTGGCACAGCGATCTTCC
TGGTGGGCCACGTGACCAAGGAGGGCTCGCTGGCAGGCCCGCGGGTGCTGGAGCACATGGTCGATACCGTGTTGTATTTC
GAGGGCGAATCCGACGGTCGCCTGCGGCTGCTGCGAGCGGTGAAGAACCGCTTCGGCGCGGTAAACGAGCTGGGCGTGTT
CGGCATGACCGACCGGGGTTTGAAAGAGGTCTCCAACCCCTCGGCGATCTTTCTCAATCGCACCCAGGAAGAAGTCCCTG
GCAGCGTCGTGATGGCCACTTGGGAAGGTACCCGGCCGATGCTGGTCGAGGTCCAGGCCCTGGTCGATGACAGCCACCTG
GCCAACCCGCGCCGCGTCACCCTGGGCCTGGATCAGAACCGTCTGGCCATGCTGCTGGCCGTTCTGCACCGGCACGGGGG
CATCCCGACCCACGATCAGGATGTGTTCCTGAACGTGGTGGGCGGTGTGAAAGTGTTGGAAACGGCTTCGGACCTGGCGT
TACTCGCTGCGGTCATGTCCAGCCTGCGCAATCGGCCGCTGGCCCATGGCCTGCTGGTGTTCGGGGAAATCGGCCTGTCG
GGTGAGGTGCGGCCTGTACCCAGTGGCCAGGAGCGGCTCAAGGAGGCTGCCAAGCACGGCTTCAAGCGTGCCATCGTGCC
CAAGGGCAATGCACCCAAGGAGGCGCCTGCAGGGTTGCAGGTCATCGCTGTGACGCGCCTTGAGCAAGCGCTGGATGCCT
TGTTCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S4I6M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461