Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP/pknB   Type   Regulator
Locus tag   OG390_RS42830 Genome accession   NZ_CP108723
Coordinates   9244026..9244409 (+) Length   127 a.a.
NCBI ID   WP_406175519.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00996     
Function   activate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9239026..9249409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG390_RS42820 (OG390_42775) - 9239987..9241432 (+) 1446 WP_406175515.1 gamma-aminobutyraldehyde dehydrogenase -
  OG390_RS42825 (OG390_42780) - 9241870..9243855 (-) 1986 WP_406175517.1 N-6 DNA methylase -
  OG390_RS42830 (OG390_42785) stkP/pknB 9244026..9244409 (+) 384 WP_406175519.1 protein kinase domain-containing protein Regulator
  OG390_RS42835 (OG390_42790) - 9244684..9246291 (+) 1608 WP_406169420.1 IS1634 family transposase -
  OG390_RS42840 (OG390_42795) - 9246316..9246603 (-) 288 WP_406175521.1 YciI family protein -
  OG390_RS42845 (OG390_42800) - 9246665..9247747 (-) 1083 WP_406175522.1 MerR family transcriptional regulator -
  OG390_RS42850 (OG390_42805) - 9247824..9248567 (-) 744 WP_406175524.1 hypothetical protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14075.07 Da        Isoelectric Point: 5.7308

>NTDB_id=665722 OG390_RS42830 WP_406175519.1 9244026..9244409(+) (stkP/pknB) [Streptomyces sp. NBC_00996]
MRDRYQLQSVLGRGVMGQVWQGSDLYLERPVAVKTIAADLLAVPQSRKEALARFKREAQAAARLHHPNITTVFDASITDD
TCCLVMELIEGTILEYLFDQQDGERFDVPSAAAVAAQLCAGRARPDR

Nucleotide


Download         Length: 384 bp        

>NTDB_id=665722 OG390_RS42830 WP_406175519.1 9244026..9244409(+) (stkP/pknB) [Streptomyces sp. NBC_00996]
GTGCGCGACCGCTACCAGCTGCAGTCGGTTCTCGGCCGAGGCGTGATGGGGCAGGTGTGGCAAGGGTCTGACCTGTATCT
CGAGCGGCCCGTGGCGGTGAAGACGATCGCCGCGGATCTGCTGGCCGTCCCGCAGAGCCGCAAGGAGGCGCTGGCTCGTT
TCAAGAGGGAGGCGCAGGCCGCTGCGCGCCTTCACCACCCCAACATCACCACGGTCTTCGACGCGTCGATCACGGACGAC
ACCTGTTGTCTGGTGATGGAACTGATCGAGGGCACCATCTTGGAGTACCTCTTCGACCAACAGGATGGCGAACGATTCGA
CGTGCCCTCGGCCGCCGCCGTCGCCGCTCAGCTGTGCGCCGGGCGAGCCCGGCCGGACCGCTGA

Domains

Predicted by InterProScan.

Protein kinase domain (Pkinase)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP/pknB Streptococcus salivarius strain HSISS4

37.398

96.85

0.362