Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SCSC_RS02865 Genome accession   NZ_AP014647
Coordinates   566994..568796 (+) Length   600 a.a.
NCBI ID   WP_003069865.1    Uniprot ID   A0AAD2Y3Y8
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 561994..573796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS02845 (SCSC_0588) - 563183..564352 (+) 1170 WP_006270163.1 MFS transporter -
  SCSC_RS02850 (SCSC_0589) - 564647..565633 (+) 987 Protein_541 6-phospho-beta-glucosidase -
  SCSC_RS02855 (SCSC_0590) celB 565633..565923 (+) 291 Protein_542 PTS cellobiose transporter subunit IIC -
  SCSC_RS02860 (SCSC_0591) coiA 566012..566974 (+) 963 WP_006270162.1 competence protein CoiA family protein Machinery gene
  SCSC_RS02865 (SCSC_0592) pepF 566994..568796 (+) 1803 WP_003069865.1 oligoendopeptidase F Regulator
  SCSC_RS02870 (SCSC_0593) - 568797..569480 (+) 684 WP_006270129.1 O-methyltransferase -
  SCSC_RS02875 (SCSC_0594) prsA 569587..570525 (+) 939 WP_006270138.1 peptidylprolyl isomerase PrsA -
  SCSC_RS02880 (SCSC_0595) - 570750..571235 (+) 486 WP_006270122.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69382.75 Da        Isoelectric Point: 4.6883

>NTDB_id=66557 SCSC_RS02865 WP_003069865.1 566994..568796(+) (pepF) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MAKQRNEIEEKYTWDLTTIFPTDEAFEMELAQVSKELKEASHLAGHLLDSADSLLKTTDIQMDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQVFAFYEPEFMAITDEQYQVFLVEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPIVHDEEGNEVQLTHGNYISLVESKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYESLVSAVNKHLPLLHRYVQLRAKILGISDLKMYDVYTPLSEIDYKFTYEAALT
KAEEVLAILGDDYLNRVKKAFSERWIDVCENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNNLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYATGFSAASALADKIVNGTQEDKEKYLHYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=66557 SCSC_RS02865 WP_003069865.1 566994..568796(+) (pepF) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGATTTAACGACGATTTTCCCAACGGATGAAGCGTTTGA
AATGGAATTAGCGCAAGTTTCAAAGGAATTAAAAGAAGCTAGTCATTTAGCAGGTCATCTTTTGGATTCAGCCGATAGCC
TTTTAAAAACGACAGACATCCAAATGGATTTAATGCGTCGTATTGAAAAGCTCTATTCCTATGCTCACATGAAAAATGAT
CAAGATACGCGTGTGGCAAAATATCAAGAGTATCAAGCCAAGGGCATGGCTATTTATAGCGAGTTCGGGCAGGTGTTTGC
TTTCTATGAGCCAGAATTTATGGCAATTACAGATGAACAGTATCAGGTTTTCTTAGTTGAAAAACCTGAATTGCAAATCT
ATCAGCACTTCTTTGACAAGTTATTGCAAAAGAAACCTCACATCCTTTCTCAACGCGAGGAAGAATTGTTGGCAGGTGCT
GGTGAAATTTTTAGTGCTGCTGGTGATACTTTTGGAATTTTGGACAATGCCGATATCGTCTTTCCAATTGTACATGATGA
AGAAGGCAATGAAGTACAATTGACGCATGGAAATTACATTAGCTTAGTGGAGTCAAAAAATCGTACAGTCCGTAAGGAAG
CTTATGAAGCACTTTATAGCGTTTATGAACAATATCAACATACTTATGCTAAGACACTCCAAACAAATGTTAAGGTGCAT
AATTACAATGCAAAAGTACGTAAGTTTTCTTCGGCACGCGAAGCAGCCTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGAGAGCTTGGTGTCTGCAGTCAACAAACATTTACCGCTCTTACATCGCTATGTTCAGTTACGAGCTAAGATTTTAGGCA
TTTCAGATCTCAAGATGTATGACGTTTATACACCGCTATCAGAGATAGATTATAAATTTACCTATGAAGCAGCTTTGACG
AAAGCGGAAGAAGTTTTAGCAATTCTTGGAGATGATTATCTTAACCGAGTGAAAAAAGCCTTTTCAGAGCGTTGGATTGA
TGTTTGTGAGAATCAAGGTAAACGGTCAGGAGCTTATTCTGGCGGCTCTTACGATACTAATGCTTTTATGTTGCTGAATT
GGCAAGATACCTTAGATAATCTCTTCACCTTGGTTCATGAAACGGGTCATAGTATGCATTCTAGCTATACTCGTGAAACA
CAGCCTTATGTTTATGGTGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACTACCAATGAAAATATACTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACTCGTTTTGCGATTCTGAATCATTTCTTGGATGGCTTCCGCGGAACTGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAGCATGCTATCCATAAGGCTGATCAAGAAGGTCAAGTCTTAACTAGTGAATTT
TTGAATAATTTATACGCAGATTTGAACGAAAAATATTATGGTTTGACGAAAGAAGATAATCCACAAATTCAATACGAATG
GGCACGGATTCCTCATTTTTACTATGACTATTATGTATTTCAATATGCGACTGGTTTTTCAGCAGCATCTGCCTTAGCCG
ATAAAATTGTCAATGGAACGCAAGAAGATAAAGAGAAATATCTCCATTATCTCAAAGCAGGAAATTCTGATTATCCGCTG
AATGTCATTAAAAAAGCTGGTGTTGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTTGTAGAAAAGTTGGGCTTAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.96

99.333

0.685

Multiple sequence alignment