Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG298_RS21350 Genome accession   NZ_CP108703
Coordinates   4747337..4748467 (+) Length   376 a.a.
NCBI ID   WP_266689827.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4742337..4753467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG298_RS21340 (OG298_21280) dnaN 4745095..4746225 (+) 1131 WP_189542991.1 DNA polymerase III subunit beta -
  OG298_RS21345 (OG298_21285) gnd 4746374..4747252 (+) 879 WP_124719870.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG298_RS21350 (OG298_21290) recF 4747337..4748467 (+) 1131 WP_266689827.1 DNA replication/repair protein RecF Machinery gene
  OG298_RS21355 (OG298_21295) - 4748464..4749036 (+) 573 WP_266689828.1 DUF721 domain-containing protein -
  OG298_RS21360 (OG298_21300) gyrB 4749450..4751555 (+) 2106 WP_406159713.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40869.54 Da        Isoelectric Point: 6.8623

>NTDB_id=665525 OG298_RS21350 WP_266689827.1 4747337..4748467(+) (recF) [Streptomyces sp. NBC_01005]
MHVTHLSLADFRSYARVEVPLEPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGPLALEYRSSVGAGVE
SARTREELYEQLIAALAEVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYDLLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRFAVSAGEVERL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=665525 OG298_RS21350 WP_266689827.1 4747337..4748467(+) (recF) [Streptomyces sp. NBC_01005]
ATGCATGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTACCTCTCGAACCGGGCGTCACCGC
GTTCGTGGGGGCCAACGGCCAGGGCAAGACGAATCTGGTCGAGGCGGTCGGCTATCTCGCGACGCTCGGCAGCCACCGGG
TCTCCTCCGACGCGCCGCTGGTGCGGATGGGCGCCGACCGGGCCGTGATCCGTGCCGCCGTGACGCAGGGGGAGCGTTCG
CAGCTGATCGAGCTGGAGCTCAATCCCGGCAGGGCCAACCGGGCCCGTATCAATAGATCGTCGCAGGTCAGGCCCCGTGA
CGTGCTGGGGATAGTACGTACGGTGCTGTTCGCGCCGGAGGACCTGGCGCTGGTCAAGGGCGACCCCGGGGAGCGCCGAC
GCTTCCTCGACGAGCTGATCACGGCCCGTTCGCCGCGGATGGCCGGGGTGCGCTCGGACTACGAGCGGGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCGGCGGCGATGGCGCGCCGGCACGGCGGCCGGTCGATGGATCTGTCCACGCTCGACGTGTG
GGACCAGCACCTGGGCCGGGTGGGCGCGGAGCTGCTGGCGCAGCGGCTGGATCTGATCGCCACCCTTCAGCCGCTGGCGG
ACAAGGCGTACGCGGATGTCGCGCCGGGCGGTGGCCCGCTGGCGCTGGAGTACCGCAGCTCGGTCGGGGCGGGCGTGGAG
TCCGCGCGTACCCGTGAGGAGCTGTACGAGCAGCTGATCGCCGCCCTCGCGGAGGTCCGCAAGCAGGAGATCGAGCGGGG
CGTGACGCTGGTCGGGCCGCACCGCGACGATCTGCTGCTGGGGCTGCGGGGCATGCCGGCCAAGGGGTACGCGAGCCATG
GCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGATCTGCTGCGCAGCGAGGGCAACGAGCCGGTGCTG
GTGCTGGACGACGTCTTCGCGGAGCTGGACGCCCGGCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGCGAACAGGT
GCTCGTGACGGCCGCGGTGGACGACGACGTTCCGGGGGTGCTGGCGGGGACCCGGTTCGCGGTGTCCGCGGGTGAGGTGG
AGCGGCTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.202

94.681

0.362