Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MOO49_RS14720 Genome accession   NZ_CP093919
Coordinates   3037023..3037652 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ST167     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3032023..3042652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO49_RS14705 helD 3032265..3034319 (-) 2055 WP_001295354.1 DNA helicase IV -
  MOO49_RS14710 yccF 3034442..3034888 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MOO49_RS14715 yccS 3034898..3037060 (+) 2163 WP_000875058.1 YccS family putative transporter -
  MOO49_RS14720 sxy/tfoX 3037023..3037652 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MOO49_RS14725 sulA 3037871..3038380 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MOO49_RS14730 ompA 3038737..3039777 (+) 1041 WP_000750416.1 porin OmpA -
  MOO49_RS14735 matP 3039853..3040305 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MOO49_RS14740 ycbZ 3040491..3042251 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=665511 MOO49_RS14720 WP_000839153.1 3037023..3037652(-) (sxy/tfoX) [Escherichia coli strain ST167]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=665511 MOO49_RS14720 WP_000839153.1 3037023..3037652(-) (sxy/tfoX) [Escherichia coli strain ST167]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1