Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   OG298_RS08220 Genome accession   NZ_CP108703
Coordinates   1771522..1772637 (-) Length   371 a.a.
NCBI ID   WP_406157537.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01005     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1766522..1777637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG298_RS08200 (OG298_08145) - 1766832..1767710 (+) 879 WP_406157533.1 SDR family NAD(P)-dependent oxidoreductase -
  OG298_RS08205 (OG298_08150) - 1767726..1768553 (-) 828 WP_266687634.1 inositol monophosphatase family protein -
  OG298_RS08210 (OG298_08155) - 1768617..1770422 (-) 1806 WP_406157535.1 gamma-glutamyltransferase family protein -
  OG298_RS08215 (OG298_08160) - 1770482..1771456 (-) 975 WP_124721589.1 ABC transporter ATP-binding protein -
  OG298_RS08220 (OG298_08165) amiE 1771522..1772637 (-) 1116 WP_406157537.1 ABC transporter ATP-binding protein Regulator
  OG298_RS08225 (OG298_08170) - 1772634..1773527 (-) 894 WP_124721463.1 ABC transporter permease -
  OG298_RS08230 (OG298_08175) - 1773524..1774477 (-) 954 WP_266687639.1 ABC transporter permease -
  OG298_RS08235 (OG298_08180) - 1774474..1776057 (-) 1584 WP_266687640.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 371 a.a.        Molecular weight: 39259.74 Da        Isoelectric Point: 6.5855

>NTDB_id=665494 OG298_RS08220 WP_406157537.1 1771522..1772637(-) (amiE) [Streptomyces sp. NBC_01005]
MTEAVHETAPGAVREPVLSVRDLSVSFRSDTRTVHAVDGVSYDLFPGEVLAVVGESGCGKSVTSMAVMGLLPPTARIGGS
IRLGGRELAGASEKELQKVRGKDIAMIFQEPMTSLNPVLTIGRQIGEVLRRHQGLSRKEARARAVELLDLVGIPAPQRRV
EEYPHQLSGGMRQRVMIAIAVACDPSVLIADEPTTALDVTVQAGILEVLQSLRERLGTAIVLVTHDLGVVADAADRVLVM
YAGRTVEQAPVHDLFGSARHPYTRGLLGAVLRPGGEGKRRLPEIPGLVPSLDSQPDACTFAPRCGRADDTCTGGRPGFRA
IDPVAGADARHRAACWHPYGADERSGTEGPATTGATDAVTTAERADQEAGK

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=665494 OG298_RS08220 WP_406157537.1 1771522..1772637(-) (amiE) [Streptomyces sp. NBC_01005]
ATGACCGAAGCCGTACACGAAACAGCGCCCGGCGCCGTGCGTGAACCCGTGCTCAGCGTCCGTGACCTGTCGGTCTCCTT
CCGCTCCGACACCCGGACCGTGCACGCCGTCGACGGGGTCTCCTACGACCTGTTCCCCGGCGAGGTCCTCGCCGTTGTGG
GGGAGTCGGGGTGCGGCAAGTCCGTCACCTCGATGGCCGTCATGGGCCTGCTGCCGCCCACCGCGAGGATCGGCGGCTCC
ATCCGGCTCGGCGGCCGGGAACTGGCCGGCGCGTCCGAGAAGGAGCTCCAGAAGGTCCGCGGCAAGGACATCGCGATGAT
CTTCCAGGAGCCGATGACCTCGCTCAACCCGGTCCTCACCATCGGCCGGCAGATCGGCGAAGTGCTCCGCAGACACCAGG
GGCTGAGCCGGAAGGAGGCCCGGGCGCGTGCCGTGGAACTCCTCGACCTGGTCGGCATCCCCGCCCCGCAGCGGCGCGTC
GAGGAGTACCCGCACCAGCTGTCCGGCGGCATGCGGCAACGCGTGATGATCGCCATCGCGGTCGCCTGCGACCCCTCCGT
GCTCATCGCGGACGAACCGACCACCGCACTCGACGTCACCGTGCAGGCGGGCATCCTGGAGGTCCTCCAGTCGCTGCGCG
AACGGCTCGGCACCGCGATCGTCCTGGTCACCCACGACCTCGGTGTGGTGGCCGACGCGGCGGACCGGGTGCTGGTGATG
TACGCGGGCCGGACCGTCGAACAGGCCCCGGTCCACGACCTGTTCGGCTCCGCCCGCCACCCGTACACCCGCGGGCTGCT
CGGCGCGGTGCTCCGGCCGGGCGGCGAGGGCAAGCGGCGGCTGCCGGAGATACCCGGACTGGTGCCGAGCCTCGACAGCC
AGCCGGACGCCTGCACCTTCGCACCCCGGTGCGGCCGCGCCGACGACACCTGCACCGGCGGACGCCCCGGCTTCAGGGCC
ATCGACCCGGTGGCGGGCGCGGACGCCCGCCACCGGGCGGCGTGCTGGCACCCGTACGGAGCGGACGAGCGGTCCGGCAC
CGAGGGCCCGGCCACCACCGGAGCGACCGACGCAGTGACCACCGCCGAGCGAGCCGACCAGGAGGCCGGAAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.077

87.601

0.412

  amiE Streptococcus thermophilus LMG 18311

46.769

87.601

0.41

  amiE Streptococcus thermophilus LMD-9

46.769

87.601

0.41

  oppD Streptococcus mutans UA159

45.511

87.062

0.396