Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG509_RS27780 Genome accession   NZ_CP108700
Coordinates   6050683..6051474 (-) Length   263 a.a.
NCBI ID   WP_406185239.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01006     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6045683..6056474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG509_RS27765 (OG509_27690) - 6045831..6046544 (+) 714 WP_406185235.1 GNAT family N-acetyltransferase -
  OG509_RS27770 (OG509_27695) - 6046627..6048507 (+) 1881 WP_406185236.1 IucA/IucC family protein -
  OG509_RS27775 (OG509_27700) - 6048560..6050530 (+) 1971 WP_406185237.1 ATP-dependent DNA helicase -
  OG509_RS27780 (OG509_27705) dinR/lexA 6050683..6051474 (-) 792 WP_406185239.1 transcriptional repressor LexA Regulator
  OG509_RS27785 (OG509_27710) nrdR 6051948..6052460 (+) 513 WP_030154281.1 transcriptional regulator NrdR -
  OG509_RS27790 (OG509_27715) - 6052593..6055481 (+) 2889 WP_406185241.1 vitamin B12-dependent ribonucleotide reductase -
  OG509_RS27795 (OG509_27720) - 6055596..6056447 (+) 852 WP_406185242.1 arylamine N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28518.28 Da        Isoelectric Point: 7.4240

>NTDB_id=665469 OG509_RS27780 WP_406185239.1 6050683..6051474(-) (dinR/lexA) [Streptomyces sp. NBC_01006]
MTTTADSATITAQNRSQSRLEPVHPMNDASLNPEGEPSRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRI

Nucleotide


Download         Length: 792 bp        

>NTDB_id=665469 OG509_RS27780 WP_406185239.1 6050683..6051474(-) (dinR/lexA) [Streptomyces sp. NBC_01006]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATCCCATGAA
CGACGCAAGTCTGAACCCGGAGGGGGAGCCCTCGCGCCCCGCGCGCTCGCTGCCAGGCCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGCAGGGTCATCGAGGTCATTCGCGACTCGGTGCAGCGGCGCGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACCTCGTCCGTCGCCCACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGGGACCCGCACCGCCCCCGGGCGTACGAGGTCCGCGGCTCCGACCAGCCCAGCTCGCAGCCCACGG
ACACCACGGGCAAGCCCGCCGCCTCGTACGTCCCCCTGGTCGGCCGGATCGCGGCAGGCGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCCATCTGCGACGGCGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGG
CCGCGATGCTCGACGGAGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGGCACGTCTGGCTGCTCCCGCACAACGCC
GCCTATCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGATCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.608

0.373