Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   MQG38_RS04345 Genome accession   NZ_CP093913
Coordinates   910883..913312 (+) Length   809 a.a.
NCBI ID   WP_258248152.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 905883..918312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS04325 - 907652..908014 (+) 363 WP_005542369.1 hypothetical protein -
  MQG38_RS04330 folK 908085..908585 (-) 501 WP_005550118.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  MQG38_RS04335 pcnB 908595..910031 (-) 1437 Protein_837 polynucleotide adenylyltransferase PcnB -
  MQG38_RS04340 dksA 910148..910585 (-) 438 WP_005542366.1 RNA polymerase-binding protein DksA -
  MQG38_RS04345 rec2 910883..913312 (+) 2430 WP_258248152.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MQG38_RS04350 msbA 913359..915107 (+) 1749 WP_005546521.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  MQG38_RS04355 lpxK 915126..916100 (+) 975 WP_005546522.1 tetraacyldisaccharide 4'-kinase -
  MQG38_RS04360 - 916122..916301 (+) 180 WP_005546524.1 Trm112 family protein -
  MQG38_RS04365 kdsB 916303..917076 (+) 774 WP_005546526.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 92280.07 Da        Isoelectric Point: 9.7458

>NTDB_id=665463 MQG38_RS04345 WP_258248152.1 910883..913312(+) (rec2) [Aggregatibacter actinomycetemcomitans strain 9R]
MSVSLDKLAIALIFSGLTLLFLPDRFLLSWQTACYLLLLLCPLMLLAYALRQDKIKQIVMWLLILMIQSAYVHQSAISIL
TQADNLANLPKTVHREFTVEEILHQQHYQTLVIRAKLAENLPEQRIYAQWKLKQPVNPGERYAGNLRLRPLSSRLNFDGF
DRQPWYFGKHITAWAEIKSAVKLENVFSLRQTALNQALQQTENLPRQGLLLALGFGERFRLDQKTWQIYQKTNTAHLIAI
SGLHIGLAMMLGFTLARLLQFALPTRYISPTFPILCGFIFALLYSQLAGLAIPTLRAMIALAMLYAIQYWRRYWTVWQFL
LRVIALLIFIDPLMLLSTSFWLSVGAVTCLIVWYQYFPLSLLQWRGHSLANSPWRKVRYVFGLFHLQFGLLWLFTPIQLL
FFNGISLNSFIANVIAVPLYSFVLVPLVLFAVVTQGAWHSWQLANDLAEKITALLTPWQDDWLAISIPHSLWITLCLTFL
FLVALYVIYKPTKPITSTLALSRQHRFKGFHFNPERALSLPLRKSAYCVGGGLIALCCLTLISQSISRPNWQLETLDVGQ
GLATLIVKDGKGVLYDTGPSWKGGSMAQLEILPYLQRQGIDLEWLILSHDDNDHAGGAKDILAMYPHIQLTTASQKRYGF
QNTEKNDRTFCQAGKQWHWQGLHFTVLSPENIVPRAENRDSCTLLLTDGTHHILLTGDADLSVEYKILPKLGKIHVLQVG
HHGSKTSTGQALVQHIQPDIALISSGRWNPWHFPHKDVVARLQQQGSQIYNTAYSGQISLLFYNEEIKIQTARAEFSPWY
RRLIGLSTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=665463 MQG38_RS04345 WP_258248152.1 910883..913312(+) (rec2) [Aggregatibacter actinomycetemcomitans strain 9R]
GTGAGCGTTTCGTTGGATAAGTTGGCTATAGCCCTGATTTTTAGCGGTTTAACATTATTGTTTTTGCCCGATCGCTTTTT
ATTATCGTGGCAAACGGCGTGCTATTTACTCCTCTTATTATGTCCACTCATGTTGCTTGCTTATGCCCTGCGACAGGACA
AAATCAAGCAAATAGTAATGTGGCTACTGATCTTGATGATTCAGTCCGCTTACGTCCACCAATCGGCAATTTCCATACTG
ACCCAGGCGGATAATCTTGCCAATCTGCCGAAAACCGTTCACCGCGAATTTACCGTCGAGGAAATTCTGCATCAGCAGCA
TTATCAAACCCTGGTTATTCGCGCCAAACTCGCCGAAAATCTTCCCGAACAACGTATTTACGCGCAATGGAAACTCAAGC
AACCAGTCAACCCCGGCGAACGTTACGCAGGCAATTTACGCTTGCGACCGCTTTCTTCCCGCCTGAATTTTGACGGTTTT
GACCGCCAGCCATGGTATTTCGGCAAGCACATCACCGCTTGGGCAGAGATTAAAAGTGCGGTCAAATTGGAAAACGTTTT
TTCGTTACGCCAAACCGCTCTCAATCAAGCCTTACAACAAACGGAGAATTTACCCCGACAAGGCTTGTTGCTGGCACTCG
GTTTTGGCGAACGTTTCCGCTTAGACCAAAAAACTTGGCAAATTTATCAAAAAACAAATACGGCGCATTTAATTGCCATT
TCAGGGCTGCATATCGGACTGGCGATGATGCTGGGTTTTACCTTGGCGCGTCTACTGCAATTTGCCTTGCCGACGCGTTA
CATCAGCCCGACATTTCCGATTCTGTGCGGATTCATTTTTGCGCTGTTATACAGCCAACTGGCAGGGCTTGCTATTCCGA
CTTTACGCGCCATGATTGCGTTAGCCATGCTCTACGCGATTCAGTATTGGCGACGATATTGGACGGTATGGCAATTCTTG
TTAAGAGTGATTGCCTTGCTGATTTTTATCGATCCGCTAATGTTGCTTTCCACCAGCTTTTGGTTGTCAGTGGGCGCAGT
GACCTGTCTGATTGTTTGGTATCAGTATTTTCCGTTGTCTCTATTGCAATGGCGCGGCCATTCCCTTGCCAATTCGCCGT
GGCGGAAAGTGCGGTATGTTTTCGGCTTGTTTCATTTGCAATTCGGTCTGCTCTGGCTGTTCACGCCCATTCAGCTGTTG
TTTTTTAACGGCATTTCGTTAAATAGTTTTATCGCCAATGTCATCGCCGTGCCGCTTTATAGCTTCGTTTTGGTCCCGTT
GGTGTTATTTGCCGTAGTCACCCAGGGTGCGTGGCATTCGTGGCAGCTCGCCAACGATTTGGCGGAAAAAATCACCGCAC
TTTTGACGCCTTGGCAGGATGACTGGTTGGCAATTTCCATTCCGCACAGTTTATGGATAACCCTATGTTTAACCTTTCTT
TTTTTAGTGGCGCTCTATGTTATTTATAAACCGACCAAACCGATAACATCCACTTTAGCCTTGTCAAGGCAGCACCGCTT
TAAAGGATTTCATTTTAATCCGGAACGCGCCTTAAGTTTACCGTTACGAAAAAGCGCTTATTGCGTGGGCGGCGGGCTGA
TTGCCCTGTGTTGCCTGACGTTAATTTCTCAGTCTATTTCACGCCCGAACTGGCAATTAGAAACCTTGGACGTGGGGCAA
GGGTTGGCAACTTTAATCGTGAAAGACGGCAAAGGCGTGCTTTACGATACCGGCCCGAGTTGGAAGGGCGGCAGTATGGC
ACAATTGGAAATTCTGCCTTATTTACAACGGCAAGGCATTGATTTGGAATGGCTGATATTAAGCCATGACGACAACGATC
ACGCAGGTGGTGCCAAAGATATTTTAGCAATGTATCCCCATATTCAACTGACCACCGCTTCACAAAAGCGATATGGTTTC
CAAAACACCGAAAAAAATGACCGCACTTTTTGTCAAGCCGGTAAACAATGGCATTGGCAGGGGTTGCATTTTACCGTGCT
ATCACCGGAGAATATCGTGCCCCGTGCGGAAAATCGGGATTCCTGTACGCTTTTATTAACCGATGGCACGCACCATATTT
TGCTGACGGGCGATGCGGATCTTAGCGTGGAATATAAGATCCTACCGAAACTTGGCAAAATCCATGTGTTACAAGTGGGG
CATCACGGTAGCAAAACCTCGACGGGGCAGGCATTAGTGCAACATATTCAACCGGACATTGCGCTGATTTCCAGCGGACG
CTGGAACCCATGGCATTTTCCCCATAAAGACGTGGTGGCGCGCCTGCAACAGCAAGGATCACAAATTTATAATACGGCAT
ATAGCGGGCAAATCAGTCTATTGTTCTACAATGAAGAGATCAAAATTCAGACCGCGCGCGCTGAATTTTCGCCTTGGTAT
CGCAGATTGATTGGCTTGAGCACGAAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(34-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)

Competence protein (Competence)

(213-486)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.469

100

0.525