Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   MQG38_RS01495 Genome accession   NZ_CP093913
Coordinates   280042..280344 (+) Length   100 a.a.
NCBI ID   WP_005545595.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275042..285344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS01455 tolB 275982..277262 (+) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  MQG38_RS01460 pal 277277..277744 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  MQG38_RS01480 comN 278449..278970 (+) 522 WP_005573910.1 type II secretion system protein Machinery gene
  MQG38_RS01485 - 278957..279331 (+) 375 Protein_289 type II secretion system protein J -
  MQG38_RS01490 - 279372..280067 (+) 696 WP_005545593.1 DUF2572 family protein -
  MQG38_RS01495 comQ 280042..280344 (+) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  MQG38_RS01500 recC 280356..283772 (+) 3417 WP_258248104.1 exodeoxyribonuclease V subunit gamma -
  MQG38_RS01505 rimI 283774..284217 (-) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  MQG38_RS01510 - 284227..284664 (-) 438 WP_005564385.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11662.57 Da        Isoelectric Point: 10.8981

>NTDB_id=665460 MQG38_RS01495 WP_005545595.1 280042..280344(+) (comQ) [Aggregatibacter actinomycetemcomitans strain 9R]
MISRLRKINYKGMSLLSLLVTLSLFSGIFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=665460 MQG38_RS01495 WP_005545595.1 280042..280344(+) (comQ) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGATTTCGCGGTTACGGAAAATTAATTACAAAGGCATGAGCCTGTTGTCTTTATTGGTTACATTAAGTCTATTCAGCGG
GATTTTTCTCACGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.818

88

0.5