Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   MQG38_RS01480 Genome accession   NZ_CP093913
Coordinates   278449..278970 (+) Length   173 a.a.
NCBI ID   WP_005573910.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273449..283970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS01440 tolQ 273525..274214 (+) 690 WP_005545584.1 protein TolQ -
  MQG38_RS01445 tolR 274300..274722 (+) 423 WP_005545585.1 colicin uptake protein TolR -
  MQG38_RS01450 tolA 274739..275947 (+) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  MQG38_RS01455 tolB 275982..277262 (+) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  MQG38_RS01460 pal 277277..277744 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  MQG38_RS01480 comN 278449..278970 (+) 522 WP_005573910.1 type II secretion system protein Machinery gene
  MQG38_RS01485 - 278957..279331 (+) 375 Protein_289 type II secretion system protein J -
  MQG38_RS01490 - 279372..280067 (+) 696 WP_005545593.1 DUF2572 family protein -
  MQG38_RS01495 comQ 280042..280344 (+) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  MQG38_RS01500 recC 280356..283772 (+) 3417 WP_258248104.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19832.99 Da        Isoelectric Point: 8.4896

>NTDB_id=665459 MQG38_RS01480 WP_005573910.1 278449..278970(+) (comN) [Aggregatibacter actinomycetemcomitans strain 9R]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVSAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTASTTCFVLQANQQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=665459 MQG38_RS01480 WP_005573910.1 278449..278970(+) (comN) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGCAAAAGGGATTCACTTTGTTGGAAATGTTAATAGCATTATTTATTATCAGCCTGTTACTGACACTGGCTTTGCCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACAGCGCAA
ATTAAAAATAGCCATTTGTGCGATTGCCTAAATCCTGTTGCTTGCCCGCAAAATGTTTCCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACTGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGGCTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAG
GATAACCAATCTTTGAGTGCTTGTGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578