Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   MQG37_RS09600 Genome accession   NZ_CP093911
Coordinates   1953970..1954491 (-) Length   173 a.a.
NCBI ID   WP_258286373.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 16R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1948970..1959491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG37_RS09580 recC 1949168..1952584 (-) 3417 WP_005588592.1 exodeoxyribonuclease V subunit gamma -
  MQG37_RS09585 comQ 1952596..1952898 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  MQG37_RS09590 - 1952873..1953568 (-) 696 WP_005545593.1 DUF2572 family protein -
  MQG37_RS09595 - 1953609..1953983 (-) 375 Protein_1847 type II secretion system protein J -
  MQG37_RS09600 comN 1953970..1954491 (-) 522 WP_258286373.1 type II secretion system protein Machinery gene
  MQG37_RS09620 pal 1955196..1955663 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  MQG37_RS09625 tolB 1955678..1956958 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  MQG37_RS09630 tolA 1956993..1958201 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  MQG37_RS09635 tolR 1958218..1958640 (-) 423 WP_005545585.1 colicin uptake protein TolR -
  MQG37_RS09640 tolQ 1958726..1959415 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19842.00 Da        Isoelectric Point: 8.4921

>NTDB_id=665425 MQG37_RS09600 WP_258286373.1 1953970..1954491(-) (comN) [Aggregatibacter actinomycetemcomitans strain 16R]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVSAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTASTTCFVLQANQQRTLFSFFNVGSLKLK
DNHSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=665425 MQG37_RS09600 WP_258286373.1 1953970..1954491(-) (comN) [Aggregatibacter actinomycetemcomitans strain 16R]
ATGCAAAAGGGATTCACTTTGTTGGAAATGTTAATAGCATTATTTATTATCAGCCTGTTACTGACACTGGCTTTGCCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACAGCGCAA
ATTAAAAATAGCCATTTGTGCGATTGCCTAAATCCTGTTGCTTGCCCGCAAAATGTTTCCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACTGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGGCTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAG
GATAACCACTCTTTGAGTGCTTGTGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

58.58

97.688

0.572