Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   MQG37_RS09585 Genome accession   NZ_CP093911
Coordinates   1952596..1952898 (-) Length   100 a.a.
NCBI ID   WP_005545595.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 16R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1947596..1957898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG37_RS09570 - 1948276..1948713 (+) 438 WP_005564385.1 DNA polymerase III subunit psi -
  MQG37_RS09575 rimI 1948723..1949166 (+) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  MQG37_RS09580 recC 1949168..1952584 (-) 3417 WP_005588592.1 exodeoxyribonuclease V subunit gamma -
  MQG37_RS09585 comQ 1952596..1952898 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  MQG37_RS09590 - 1952873..1953568 (-) 696 WP_005545593.1 DUF2572 family protein -
  MQG37_RS09595 - 1953609..1953983 (-) 375 Protein_1847 type II secretion system protein J -
  MQG37_RS09600 comN 1953970..1954491 (-) 522 WP_258286373.1 type II secretion system protein Machinery gene
  MQG37_RS09620 pal 1955196..1955663 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  MQG37_RS09625 tolB 1955678..1956958 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11662.57 Da        Isoelectric Point: 10.8981

>NTDB_id=665424 MQG37_RS09585 WP_005545595.1 1952596..1952898(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 16R]
MISRLRKINYKGMSLLSLLVTLSLFSGIFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=665424 MQG37_RS09585 WP_005545595.1 1952596..1952898(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 16R]
ATGATTTCGCGGTTACGGAAAATTAATTACAAAGGCATGAGCCTGTTGTCTTTATTGGTTACATTAAGTCTATTCAGCGG
GATTTTTCTCACGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.818

88

0.5