Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   MQG43_RS09565 Genome accession   NZ_CP093910
Coordinates   1951620..1952141 (-) Length   173 a.a.
NCBI ID   WP_005573910.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 27R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1946620..1957141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG43_RS09545 recC 1946818..1950234 (-) 3417 WP_005588592.1 exodeoxyribonuclease V subunit gamma -
  MQG43_RS09550 comQ 1950246..1950548 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  MQG43_RS09555 - 1950523..1951218 (-) 696 WP_005545593.1 DUF2572 family protein -
  MQG43_RS09560 - 1951259..1951633 (-) 375 Protein_1843 type II secretion system protein J -
  MQG43_RS09565 comN 1951620..1952141 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  MQG43_RS09585 pal 1952846..1953313 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  MQG43_RS09590 tolB 1953328..1954608 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  MQG43_RS09595 tolA 1954643..1955851 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  MQG43_RS09600 tolR 1955868..1956290 (-) 423 WP_258271206.1 colicin uptake protein TolR -
  MQG43_RS09605 tolQ 1956376..1957065 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19832.99 Da        Isoelectric Point: 8.4896

>NTDB_id=665400 MQG43_RS09565 WP_005573910.1 1951620..1952141(-) (comN) [Aggregatibacter actinomycetemcomitans strain 27R]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVSAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTASTTCFVLQANQQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=665400 MQG43_RS09565 WP_005573910.1 1951620..1952141(-) (comN) [Aggregatibacter actinomycetemcomitans strain 27R]
ATGCAAAAGGGATTCACTTTGTTGGAAATGTTAATAGCATTATTTATTATCAGCCTGTTACTGACACTGGCTTTGCCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACAGCGCAA
ATTAAAAATAGCCATTTGTGCGATTGCCTAAATCCTGTTGCTTGCCCGCAAAATGTTTCCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACTGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGGCTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAG
GATAACCAATCTTTGAGTGCTTGTGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578