Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   MQG43_RS09550 Genome accession   NZ_CP093910
Coordinates   1950246..1950548 (-) Length   100 a.a.
NCBI ID   WP_005545595.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 27R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1945246..1955548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG43_RS09535 - 1945926..1946363 (+) 438 WP_005564385.1 DNA polymerase III subunit psi -
  MQG43_RS09540 rimI 1946373..1946816 (+) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  MQG43_RS09545 recC 1946818..1950234 (-) 3417 WP_005588592.1 exodeoxyribonuclease V subunit gamma -
  MQG43_RS09550 comQ 1950246..1950548 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  MQG43_RS09555 - 1950523..1951218 (-) 696 WP_005545593.1 DUF2572 family protein -
  MQG43_RS09560 - 1951259..1951633 (-) 375 Protein_1843 type II secretion system protein J -
  MQG43_RS09565 comN 1951620..1952141 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  MQG43_RS09585 pal 1952846..1953313 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  MQG43_RS09590 tolB 1953328..1954608 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11662.57 Da        Isoelectric Point: 10.8981

>NTDB_id=665399 MQG43_RS09550 WP_005545595.1 1950246..1950548(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 27R]
MISRLRKINYKGMSLLSLLVTLSLFSGIFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=665399 MQG43_RS09550 WP_005545595.1 1950246..1950548(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 27R]
ATGATTTCGCGGTTACGGAAAATTAATTACAAAGGCATGAGCCTGTTGTCTTTATTGGTTACATTAAGTCTATTCAGCGG
GATTTTTCTCACGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.818

88

0.5