Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG623_RS17360 Genome accession   NZ_CP108688
Coordinates   3842777..3843907 (+) Length   376 a.a.
NCBI ID   WP_406147521.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3837777..3848907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG623_RS17345 (OG623_17265) dnaA 3837844..3839625 (+) 1782 WP_406147519.1 chromosomal replication initiator protein DnaA -
  OG623_RS17350 (OG623_17270) dnaN 3840561..3841691 (+) 1131 WP_406151870.1 DNA polymerase III subunit beta -
  OG623_RS17355 (OG623_17275) gnd 3841836..3842714 (+) 879 WP_362886305.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG623_RS17360 (OG623_17280) recF 3842777..3843907 (+) 1131 WP_406147521.1 DNA replication/repair protein RecF Machinery gene
  OG623_RS17365 (OG623_17285) - 3843982..3844485 (+) 504 WP_406151872.1 DUF721 domain-containing protein -
  OG623_RS17370 (OG623_17290) gyrB 3844889..3846958 (+) 2070 WP_406147523.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40751.41 Da        Isoelectric Point: 7.1485

>NTDB_id=665359 OG623_RS17360 WP_406147521.1 3842777..3843907(+) (recF) [Streptomyces sp. NBC_01012]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVVRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLSPLADKAYADVAPGGGPVTLEYRSSAGADVG
PERTREELYEQVMAALVAARKQEIERGVTLVGPHRDDLVLGLRGMPAKGYASHGESWSYALALRLASYELLRTEGPEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPAVLAGARYAVSAGSVERL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=665359 OG623_RS17360 WP_406147521.1 3842777..3843907(+) (recF) [Streptomyces sp. NBC_01012]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGACAGGGCAAGACCAATTTGGTGGAGGCCGTCGGCTATCTCGCGACCCTCGGCAGCCACCGGG
TGTCATCCGACGCTCCCCTGGTACGCATGGGCGCGGAGCGCGCCGTCGTACGGGCCGCGGTCACCCAGGGCGAGCGCTCG
CAGCTGATCGAGCTCGAGCTCAATCCGGGCCGCGCCAACCGGGCCCGTATCAACAGGTCGTCGCAGGTCAGACCGCGTGA
CGTCCTGGGGATAGTGCGGACGGTGCTCTTCGCCCCCGAGGACCTGGCCCTGGTGAAGGGCGATCCGGGCGAGCGCCGGC
GCTTCCTGGACGAGCTGATCACGGCGCGGTCCCCCCGCATGGCAGGGGTCCGCTCCGACTACGACCGGGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCCGCCGCCCTGGCCCGCAGACACGGCGGCCGCTCGATGGACCTCTCCACGCTCGACGTGTG
GGACCAGCACCTGGGCCGGGTGGGGGCTGAGCTGCTGGCGCAGCGGCTCGACCTGATCGCGACCCTGTCGCCGCTGGCGG
ACAAGGCGTACGCGGACGTCGCCCCCGGCGGTGGACCCGTCACGCTGGAGTACCGCAGCTCGGCCGGTGCCGATGTCGGA
CCCGAGCGCACCCGCGAGGAGCTGTACGAGCAGGTGATGGCGGCCCTGGTGGCGGCGCGCAAGCAGGAGATCGAGCGCGG
GGTGACCCTGGTCGGTCCGCACCGCGACGACCTGGTGCTCGGCCTGCGCGGAATGCCGGCCAAGGGGTACGCGAGCCACG
GCGAGTCCTGGTCGTACGCCCTGGCGCTGAGGCTCGCCTCGTACGAGCTGCTCCGCACCGAGGGCCCCGAGCCGGTGCTG
GTGCTCGACGACGTGTTCGCCGAGCTGGACGCGCGCCGTCGCGAGCGGCTGGCGGAGCTGGTGGCCCCCGGTGAGCAGGT
ACTCGTGACGGCGGCCGTGGACGACGACGTCCCCGCGGTGCTGGCGGGAGCCAGGTACGCCGTGTCCGCGGGGTCGGTGG
AGCGGCTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.483

94.681

0.364