Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG623_RS07880 Genome accession   NZ_CP108688
Coordinates   1820299..1821096 (+) Length   265 a.a.
NCBI ID   WP_406145485.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01012     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815299..1826096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG623_RS07865 (OG623_07820) - 1815713..1815856 (-) 144 WP_267942482.1 hypothetical protein -
  OG623_RS07870 (OG623_07825) - 1816184..1819093 (-) 2910 WP_406145483.1 vitamin B12-dependent ribonucleotide reductase -
  OG623_RS07875 (OG623_07830) nrdR 1819249..1819764 (-) 516 WP_406145484.1 transcriptional regulator NrdR -
  OG623_RS07880 (OG623_07835) dinR/lexA 1820299..1821096 (+) 798 WP_406145485.1 transcriptional repressor LexA Regulator
  OG623_RS07885 (OG623_07840) - 1821208..1823175 (-) 1968 WP_406145486.1 ATP-dependent DNA helicase -
  OG623_RS07890 (OG623_07845) - 1823226..1825076 (-) 1851 WP_406145487.1 IucA/IucC family protein -
  OG623_RS07895 (OG623_07850) - 1825137..1825847 (-) 711 WP_406145488.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28765.55 Da        Isoelectric Point: 7.0792

>NTDB_id=665334 OG623_RS07880 WP_406145485.1 1820299..1821096(+) (dinR/lexA) [Streptomyces sp. NBC_01012]
MTTTADSATITAQDHRSQSRLEPVHAMNDSVMNAEGPEPTRAGRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=665334 OG623_RS07880 WP_406145485.1 1820299..1821096(+) (dinR/lexA) [Streptomyces sp. NBC_01012]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACTCAGTCATGAACGCGGAGGGGCCCGAGCCCACCCGAGCCGGGCGCTCCTTGCCCGGCCGCCCTCCAGGAATCC
GGGCGGACAGCTCCGGGCTCACGGACCGGCAGCGGCGTGTGATCGAGGTGATCCGGGATTCGGTGCAGCGCCGGGGCTAC
CCCCCGTCGATGCGCGAGATCGGTCAGGCCGTGGGGCTGTCCAGCACCTCTTCCGTCGCCCACCAGCTGATGGCTCTGGA
GCGTAAGGGCTTCCTGCGCCGCGACCCTCACAGGCCGCGGGCCTACGAGGTGCGGGGCTCGGACCAGCCCAGCACCCAGC
CGACCGACACCACGGGGAAGCCCGCCGCTTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGCGGGCCGATCCTCGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGG
TGACTCGATGATCGAGGCAGCGATCATGGACGGGGACTGGGTCACGGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACA
TCGTGGCAGCCATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGCCATGTGTGGCTCCTCCCGCAC
AACTCCGCCTACCAGCCGATTCCCGGTGACGAGGCGACGATCCTGGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37