Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG538_RS08710 Genome accession   NZ_CP108687
Coordinates   2041705..2042499 (+) Length   264 a.a.
NCBI ID   WP_219573501.1    Uniprot ID   A0ABY9IM67
Organism   Streptomyces sp. NBC_01013     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036705..2047499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG538_RS08695 (OG538_08675) - 2036841..2037293 (-) 453 WP_406091779.1 hypothetical protein -
  OG538_RS08700 (OG538_08680) - 2037538..2040444 (-) 2907 WP_406091781.1 vitamin B12-dependent ribonucleotide reductase -
  OG538_RS08705 (OG538_08685) nrdR 2040611..2041123 (-) 513 WP_406091783.1 transcriptional regulator NrdR -
  OG538_RS08710 (OG538_08690) dinR/lexA 2041705..2042499 (+) 795 WP_219573501.1 transcriptional repressor LexA Regulator
  OG538_RS08715 (OG538_08695) - 2042638..2044608 (-) 1971 WP_406091786.1 ATP-dependent DNA helicase -
  OG538_RS08720 (OG538_08700) - 2044647..2046587 (-) 1941 WP_406091788.1 IucA/IucC family protein -
  OG538_RS08725 (OG538_08705) - 2046648..2047370 (-) 723 WP_406091790.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28622.39 Da        Isoelectric Point: 6.9854

>NTDB_id=665262 OG538_RS08710 WP_219573501.1 2041705..2042499(+) (dinR/lexA) [Streptomyces sp. NBC_01013]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=665262 OG538_RS08710 WP_219573501.1 2041705..2042499(+) (dinR/lexA) [Streptomyces sp. NBC_01013]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAGCCCGCGCGCCCAGCGCGCTCGCTGCCCGGACGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTACAACGGCGGGGCTACCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGCACGTCCTCCGTCGCACACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCCCATCGCCCCCGGGCGTACGAGGTGCGTGGTTCGGACCAGCCCAGCACCCAGCCCA
CGGACACCACCGGAAAGCCCGCGGCCTCGTACGTGCCGCTGGTGGGCCGGATCGCGGCCGGTGGGCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTGTTCCCCCTCCCCCGCCAGCTGGTCGGGGACGGAGAGCTCTTCGTGCTGAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGCGACGGGGACTGGGTCACGGTGCGCCGCCAGCCCGTGGCGGAGAACGGCGACATCG
TCGCCGCCATGCTGGACGGCGAGGCCACGGTCAAACGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTCGTGGCGGTGCTGCGACGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371