Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG282_RS20020 Genome accession   NZ_CP108685
Coordinates   4578194..4579174 (+) Length   326 a.a.
NCBI ID   WP_250301818.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01014     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4573194..4584174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG282_RS19995 (OG282_19920) - 4573597..4574244 (+) 648 WP_250301813.1 TetR/AcrR family transcriptional regulator -
  OG282_RS20000 (OG282_19925) - 4574347..4575915 (+) 1569 WP_250301814.1 MFS transporter -
  OG282_RS20005 (OG282_19930) - 4575976..4576554 (-) 579 WP_406114859.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG282_RS20010 (OG282_19935) - 4576650..4577429 (+) 780 WP_250301816.1 dioxygenase -
  OG282_RS20015 (OG282_19940) - 4577463..4578011 (-) 549 WP_406114861.1 GNAT family N-acetyltransferase -
  OG282_RS20020 (OG282_19945) rpoS 4578194..4579174 (+) 981 WP_250301818.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG282_RS20025 (OG282_19950) - 4579334..4580905 (-) 1572 WP_406114863.1 MFS transporter -
  OG282_RS20030 (OG282_19955) - 4580968..4581933 (+) 966 WP_250301820.1 YafY family protein -
  OG282_RS20035 (OG282_19960) - 4581994..4582740 (-) 747 WP_250301821.1 DUF6227 family protein -
  OG282_RS20040 (OG282_19965) - 4582903..4584027 (-) 1125 WP_329166414.1 P1 family peptidase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36381.09 Da        Isoelectric Point: 5.0295

>NTDB_id=665225 OG282_RS20020 WP_250301818.1 4578194..4579174(+) (rpoS) [Streptomyces sp. NBC_01014]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQVLDGSVQSEAGGASREEL
EALVAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHSEIAAELDAKPERISDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGKLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=665225 OG282_RS20020 WP_250301818.1 4578194..4579174(+) (rpoS) [Streptomyces sp. NBC_01014]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCCGACAGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATCGCACGTACGCCACTGCTCGACGCCGCAAAGGAGGTCGAGCTGTCTCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCAGGTGCTCGACGGTTCCGTGCAGAGCGAGGCGGGCGGGGCCTCGCGTGAGGAACTG
GAGGCGCTGGTCGCCGCGGGAGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTGCGACTGGTCGTCGCTGTCGCCCG
CCGCTATCCGCGAGCCGGGCTGCCGCTGCTCGACCTCATCCAGGAGGGGAACGCCGGCCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCCATCACCCGGTCCATAGCCGAC
CAGTCCCGGACCATCCGGCTCCCTGTCCACCTGGTGGAGGAACTGGGCCGTATCCGCCGGGTCCAGCGGGAGTTCAACCG
TGAGCACGGCCGGGACCCGGAGCACTCGGAGATCGCGGCCGAGCTGGACGCCAAGCCGGAGCGGATCAGCGATGTCCTCG
ACTGGGCCCGCGACCCGGTCAGCCTGAACATGCCGGTGGACGACCAGGGCGAGACACAGTTCGGTGACCTCCTGGAGGAC
ACCTCGGCGGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGCGAAGAGCTGGACGAACTGATCGGCAAGCTCGA
CCACCGCACGGCCTCGATCATCAAGATGCGGTTCGGCATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGCCTGACGCGCGAGCGGATCCGGCAGATCGAGAAGCACGCCCTGCTCGAACTCAAGAAGATGGCCGACGACGTG
GGCTTCGACGCTGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.333

92.025

0.362