Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MPJ80_RS00465 Genome accession   NZ_CP093548
Coordinates   98972..99601 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YL03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 93972..104601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPJ80_RS00445 (MPJ80_00445) ycbZ 94362..96122 (-) 1761 WP_000156476.1 AAA family ATPase -
  MPJ80_RS00450 (MPJ80_00450) matP 96308..96760 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MPJ80_RS00455 (MPJ80_00455) ompA 96835..97887 (-) 1053 WP_000750418.1 porin OmpA -
  MPJ80_RS00460 (MPJ80_00460) sulA 98244..98753 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MPJ80_RS00465 (MPJ80_00465) sxy/tfoX 98972..99601 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MPJ80_RS00470 (MPJ80_00470) yccS 99564..101726 (-) 2163 WP_000875041.1 YccS family putative transporter -
  MPJ80_RS00475 (MPJ80_00475) yccF 101736..102182 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MPJ80_RS00480 (MPJ80_00480) helD 102305..104359 (+) 2055 WP_020232990.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=665202 MPJ80_RS00465 WP_000839153.1 98972..99601(+) (sxy/tfoX) [Escherichia coli strain YL03]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=665202 MPJ80_RS00465 WP_000839153.1 98972..99601(+) (sxy/tfoX) [Escherichia coli strain YL03]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1