Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG331_RS33655 Genome accession   NZ_CP108683
Coordinates   7318440..7320173 (-) Length   577 a.a.
NCBI ID   WP_406203156.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01017     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7313440..7325173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG331_RS33645 (OG331_33455) - 7315078..7316388 (+) 1311 WP_406203152.1 RNA polymerase sigma factor -
  OG331_RS33650 (OG331_33460) rcrQ 7316512..7318440 (-) 1929 WP_406203154.1 ABC transporter ATP-binding protein Regulator
  OG331_RS33655 (OG331_33465) rcrP 7318440..7320173 (-) 1734 WP_406203156.1 ABC transporter ATP-binding protein Regulator
  OG331_RS33660 (OG331_33470) - 7320345..7321799 (-) 1455 WP_406203158.1 FGGY-family carbohydrate kinase -
  OG331_RS33665 (OG331_33475) - 7322001..7322309 (-) 309 WP_328881859.1 YtxH domain-containing protein -
  OG331_RS33685 (OG331_33495) - 7322921..7324660 (-) 1740 WP_406203160.1 VanW family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62796.97 Da        Isoelectric Point: 6.4063

>NTDB_id=665155 OG331_RS33655 WP_406203156.1 7318440..7320173(-) (rcrP) [Streptomyces sp. NBC_01017]
MLIRLLRTYLRPYRKPIAWLVLLQFLQTCATLYLPTLNADIIDKGVVTGDTGYILSYGALMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGISVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQHRFRKANAELTDMATGTGKLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PVAPVRELRRHGHLEIRGAGFRYPGAEEPVLKSIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGRVLVDGEDVA
TIDPQLLARTVGLVPQRPYLFAGTVATNLRYGNPDATDEELWQALEVAQAKEFVERLEGGLNAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIVVLDEGQVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=665155 OG331_RS33655 WP_406203156.1 7318440..7320173(-) (rcrP) [Streptomyces sp. NBC_01017]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACCGAAAACCCATTGCCTGGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAAGGGCGTCGTCACCGGCGACACCGGCTACA
TCCTGTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGGACCGCGGCGGCGCTCGGCCGGGACGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTCGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGGTGGCCGTGGTGCCGGTCCTCGGCATCAGCGTGACCTTGATCGTACGGCGGCTGCGGCCGCTGTTCCGGAGCATGCA
GGTGCGTCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGTGCCTTCGTCCGCGACG
AGTACGAGCAGCACCGCTTCCGCAAGGCCAACGCCGAGCTCACCGACATGGCGACGGGCACCGGCAAGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCATCGCATCGACAGCGG
CGGGATGCAGATCGGTGACCTGACCGCCTTCCTCGCCTATCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACGTCGTCGAGCGTGGTGCCG
CCGGTCGCGCCGGTGCGGGAGCTGCGCCGGCACGGTCATCTGGAGATCCGGGGTGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGTCGATCGACCTGGTCGCGCTGCCGGGCGAGACGACCGCCGTCATCGGCTCGACGGGCAGCGGGA
AGTCGACCCTGCTGGGCCTCGTCCCGCGACTGTTCGACGCGACCGACGGGCGGGTGCTCGTGGACGGGGAGGACGTGGCG
ACCATCGATCCCCAGCTGCTGGCCAGGACCGTCGGGCTGGTGCCGCAGAGGCCGTACCTGTTCGCCGGGACGGTCGCGAC
CAACCTGCGCTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCAGGCGCTTGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAGGGCGGGCTGAACGCGCCCGTCTCGCAGGGCGGGACCAATGTCTCCGGTGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCCGCCCTGCGTGCGGCGCTCGGGCGCGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTGCTCGACGAGGGGCAGGTCGTCGGCACGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.894

97.747

0.39