Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MOW04_RS12820 Genome accession   NZ_CP093546
Coordinates   2486289..2487056 (-) Length   255 a.a.
NCBI ID   WP_076458122.1    Uniprot ID   -
Organism   Bacillus sp. K1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2481289..2492056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW04_RS12800 - 2481463..2482275 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  MOW04_RS12805 ccpN 2482301..2482939 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  MOW04_RS12810 glyS 2483072..2485111 (-) 2040 WP_076458121.1 glycine--tRNA ligase subunit beta -
  MOW04_RS12815 glyQ 2485104..2485991 (-) 888 WP_076458153.1 glycine--tRNA ligase subunit alpha -
  MOW04_RS12820 recO 2486289..2487056 (-) 768 WP_076458122.1 DNA repair protein RecO Machinery gene
  MOW04_RS12825 - 2487093..2487236 (-) 144 WP_003230053.1 YqzL family protein -
  MOW04_RS12830 era 2487384..2488289 (-) 906 WP_003230051.1 GTPase Era -
  MOW04_RS12835 - 2488270..2488680 (-) 411 WP_032722130.1 cytidine deaminase -
  MOW04_RS12840 - 2488799..2489170 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  MOW04_RS12845 ybeY 2489151..2489624 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  MOW04_RS12850 pgpH 2489625..2491760 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=665155 MOW04_RS12820 WP_076458122.1 2486289..2487056(-) (recO) [Bacillus sp. K1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=665155 MOW04_RS12820 WP_076458122.1 2486289..2487056(-) (recO) [Bacillus sp. K1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAAATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAGGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGGTACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992