Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG331_RS33650 Genome accession   NZ_CP108683
Coordinates   7316512..7318440 (-) Length   642 a.a.
NCBI ID   WP_406203154.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01017     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7311512..7323440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG331_RS33635 (OG331_33445) - 7311767..7313032 (+) 1266 WP_406203148.1 NAD(P)/FAD-dependent oxidoreductase -
  OG331_RS33640 (OG331_33450) dnaG 7313062..7314963 (+) 1902 WP_406203150.1 DNA primase -
  OG331_RS33645 (OG331_33455) - 7315078..7316388 (+) 1311 WP_406203152.1 RNA polymerase sigma factor -
  OG331_RS33650 (OG331_33460) rcrQ 7316512..7318440 (-) 1929 WP_406203154.1 ABC transporter ATP-binding protein Regulator
  OG331_RS33655 (OG331_33465) rcrP 7318440..7320173 (-) 1734 WP_406203156.1 ABC transporter ATP-binding protein Regulator
  OG331_RS33660 (OG331_33470) - 7320345..7321799 (-) 1455 WP_406203158.1 FGGY-family carbohydrate kinase -
  OG331_RS33665 (OG331_33475) - 7322001..7322309 (-) 309 WP_328881859.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69569.87 Da        Isoelectric Point: 5.4244

>NTDB_id=665154 OG331_RS33650 WP_406203154.1 7316512..7318440(-) (rcrQ) [Streptomyces sp. NBC_01017]
MAGPMGRMMAGGGPDQRSLDFKVSGRRLIAQFKPERVTIYALLVCVVVSVGLSVAGPKILGTATDLVFAGIVGRQFESGM
SKEQALAAMRERGDNQIADMLRSTDFTPGQGIDFGAVGNVLLFALAVFLVAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKSRRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHTLVKVFGRQEESAQQFAEQNEALYEAGFKAQFNSGVMQPLMLFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQDADPVPGVRPEELRGRVALE
GVSFRYDPEKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSSGRITLDGVDVARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHGELLAADGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=665154 OG331_RS33650 WP_406203154.1 7316512..7318440(-) (rcrQ) [Streptomyces sp. NBC_01017]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGCGGCGGCCCCGATCAGCGCTCGCTGGACTTCAAGGTGTCGGGCAGGCG
GCTGATCGCGCAGTTCAAGCCCGAGCGGGTCACCATCTACGCGCTGCTGGTCTGCGTGGTCGTGAGCGTGGGCCTGTCGG
TCGCCGGACCGAAGATCCTCGGTACGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGCAGTTCGAGTCCGGGATG
AGCAAGGAGCAGGCCCTCGCGGCCATGCGGGAGCGCGGCGACAACCAGATCGCCGACATGCTGCGCAGCACCGACTTCAC
ACCGGGCCAGGGCATCGACTTCGGCGCGGTGGGGAACGTACTGCTCTTCGCGCTCGCCGTGTTCCTCGTCGCCGGTCTGC
TGATGGCGGTGGCGACTCGGCTGGTGAACCGTGCCGTGAACCGGACGATGTTCCGGATGCGGGAGGACGTCCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGAGCCGGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGGTGCTCACCATCATCGGTGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCCTTCGTGGTCGCCACGCGCGTCGGCAAG
CGGTCACAGCCGCACTTCGTGCAGCAGTGGCGCACGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTATACCGGGCA
CACCCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGCTGTTCGTGTCGAACATCAACTACGTCCTGGTCGCG
GTGGTCGGCGGTCTGCGTGTGGCGTCCGGCTCGCTGTCCATCGGTGACGTACAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCGGAGCGGATCTTCGAGC
TGCTGGACGCCGAGGAGCAGGACGCGGATCCCGTGCCGGGTGTGCGGCCCGAGGAGCTGCGGGGGCGGGTGGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGTTGATCGAGAACCTGTCGCTGACGGTGGAGCCCGGGCACACGGTCGC
CATCGTCGGTCCCACGGGCGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGCTTCTACGACGTGTCGTCCGGGCGCA
TCACCCTCGACGGGGTCGACGTCGCCCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGGATGGTGCTGCAGGACACG
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCCCGGGACGTCACCCGGGGCGAGATCGAGGAGGC
GGCTCGGGCCGCCCACGCCGATCGGTTCATCCGTACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGCAGCG
GGGTCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCCGATCCGGTGATTCTGGTGCTGGACGAG
GCGACGTCGTCGGTCGACACCCGTACGGAGGTGTTGATCCAGAAGGCGATGGCGAAGCTCGCGCATGGGCGGACGTCGTT
CGTGATCGCGCATCGGTTGTCGACGATTCGGGACGCGGACACGATCCTGGTGATGGAGAACGGTTCGATCGTGGAACAGG
GCGCGCACGGGGAGCTGTTGGCGGCCGACGGGGCGTATGCGCGGTTGTACCAGGCGCAGTTCGCTCAGGCGGTGGCGGAA
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.226

96.417

0.388