Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   MOW04_RS12290 Genome accession   NZ_CP093546
Coordinates   2396405..2397208 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. K1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2391405..2402208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW04_RS12265 - 2392543..2393274 (-) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -
  MOW04_RS12270 - 2393353..2393973 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  MOW04_RS12275 - 2393993..2394289 (-) 297 WP_014480225.1 hypothetical protein -
  MOW04_RS12280 - 2394597..2394749 (+) 153 WP_014480226.1 hypothetical protein -
  MOW04_RS12285 - 2394822..2395940 (+) 1119 WP_128993136.1 NADH-dependent flavin oxidoreductase -
  MOW04_RS12290 spo0A 2396405..2397208 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  MOW04_RS12295 spoIVB 2397484..2398764 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  MOW04_RS12300 recN 2398939..2400669 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  MOW04_RS12305 argR 2400706..2401155 (-) 450 WP_003230265.1 arginine repressor ArgR -
  MOW04_RS12310 - 2401253..2402098 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=665144 MOW04_RS12290 WP_003226427.1 2396405..2397208(-) (spo0A) [Bacillus sp. K1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=665144 MOW04_RS12290 WP_003226427.1 2396405..2397208(-) (spo0A) [Bacillus sp. K1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1