Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MOW04_RS11295 Genome accession   NZ_CP093546
Coordinates   2218975..2219595 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. K1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2213975..2224595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW04_RS11255 - 2215106..2215612 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  MOW04_RS11260 - 2215750..2216169 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  MOW04_RS11265 - 2216190..2216567 (-) 378 WP_046381139.1 YppG family protein -
  MOW04_RS11270 - 2216755..2216943 (+) 189 WP_003230690.1 YppF family protein -
  MOW04_RS11275 - 2216982..2217353 (-) 372 WP_003246080.1 YppE family protein -
  MOW04_RS11280 - 2217399..2217644 (-) 246 WP_004398488.1 YppD family protein -
  MOW04_RS11285 sspM 2217843..2217947 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MOW04_RS11290 - 2217972..2218934 (-) 963 WP_046381140.1 DUF2515 domain-containing protein -
  MOW04_RS11295 recU 2218975..2219595 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MOW04_RS11300 - 2219617..2222349 (+) 2733 WP_163130728.1 PBP1A family penicillin-binding protein -
  MOW04_RS11305 - 2222425..2222919 (-) 495 WP_029726783.1 YpoC family protein -
  MOW04_RS11310 nth 2222916..2223575 (-) 660 WP_009967580.1 endonuclease III -
  MOW04_RS11315 dnaD 2223594..2224292 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=665143 MOW04_RS11295 WP_004399067.1 2218975..2219595(+) (recU) [Bacillus sp. K1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=665143 MOW04_RS11295 WP_004399067.1 2218975..2219595(+) (recU) [Bacillus sp. K1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1