Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MOW04_RS02005 Genome accession   NZ_CP093546
Coordinates   372760..373209 (-) Length   149 a.a.
NCBI ID   WP_163131168.1    Uniprot ID   -
Organism   Bacillus sp. K1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 367760..378209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW04_RS01965 - 368204..368399 (+) 196 Protein_343 hypothetical protein -
  MOW04_RS01970 - 368439..368753 (+) 315 Protein_344 RDD family protein -
  MOW04_RS01975 - 368835..369167 (+) 333 WP_015252849.1 YckD family protein -
  MOW04_RS01980 - 369295..369717 (+) 423 WP_174616579.1 MarR family transcriptional regulator -
  MOW04_RS01985 - 369705..370046 (+) 342 WP_032724911.1 DUF3147 family protein -
  MOW04_RS01990 - 370065..370793 (+) 729 WP_046380777.1 AAA family ATPase -
  MOW04_RS01995 bglC 370865..372298 (+) 1434 WP_046380778.1 6-phospho-beta-glucosidase -
  MOW04_RS02000 nin/comJ 372335..372733 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  MOW04_RS02005 nucA/comI 372760..373209 (-) 450 WP_163131168.1 DNA-entry nuclease Machinery gene
  MOW04_RS02010 tlpC 373377..375098 (-) 1722 WP_046380779.1 methyl-accepting chemotaxis protein TlpC -
  MOW04_RS02015 hxlB 375209..375766 (-) 558 WP_163131166.1 6-phospho-3-hexuloisomerase -
  MOW04_RS02020 hxlA 375772..376404 (-) 633 WP_076458402.1 3-hexulose-6-phosphate synthase -
  MOW04_RS02025 hxlR 376637..376999 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16454.42 Da        Isoelectric Point: 4.5282

>NTDB_id=665113 MOW04_RS02005 WP_163131168.1 372760..373209(-) (nucA/comI) [Bacillus sp. K1]
MNITTDIIKTILLVIVLIAAAAIGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=665113 MOW04_RS02005 WP_163131168.1 372760..373209(-) (nucA/comI) [Bacillus sp. K1]
GTGAACATCACGACGGACATTATAAAAACGATACTTCTCGTCATCGTCCTCATAGCAGCTGCAGCTATCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973