Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MOW04_RS00245 Genome accession   NZ_CP093546
Coordinates   44300..44590 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus sp. K1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39300..49590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW04_RS00205 darA 39323..39652 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  MOW04_RS00210 - 39665..40105 (+) 441 WP_009966249.1 YaaR family protein -
  MOW04_RS00215 holB 40117..41106 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  MOW04_RS00220 ricT 41109..41936 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  MOW04_RS00225 yabA 41951..42310 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  MOW04_RS00230 - 42369..43112 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MOW04_RS00235 - 43099..43398 (+) 300 WP_163130845.1 GIY-YIG nuclease family protein -
  MOW04_RS00240 rsmI 43373..44251 (+) 879 WP_163130842.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MOW04_RS00245 abrB 44300..44590 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  MOW04_RS00250 metG 45085..47079 (+) 1995 WP_163130839.1 methionine--tRNA ligase -
  MOW04_RS00255 - 47159..47926 (+) 768 WP_014475570.1 TatD family hydrolase -
  MOW04_RS00260 - 48082..49395 (+) 1314 WP_137200530.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=665108 MOW04_RS00245 WP_003226760.1 44300..44590(-) (abrB) [Bacillus sp. K1]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=665108 MOW04_RS00245 WP_003226760.1 44300..44590(-) (abrB) [Bacillus sp. K1]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1