Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG331_RS15210 Genome accession   NZ_CP108683
Coordinates   3331024..3331803 (+) Length   259 a.a.
NCBI ID   WP_328878695.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01017     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3326024..3336803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG331_RS15200 (OG331_15030) - 3326830..3329724 (-) 2895 WP_406196270.1 vitamin B12-dependent ribonucleotide reductase -
  OG331_RS15205 (OG331_15035) nrdR 3329891..3330460 (-) 570 WP_383248438.1 transcriptional regulator NrdR -
  OG331_RS15210 (OG331_15040) dinR/lexA 3331024..3331803 (+) 780 WP_328878695.1 transcriptional repressor LexA Regulator
  OG331_RS15215 (OG331_15045) - 3332004..3334025 (-) 2022 WP_406196272.1 ATP-dependent DNA helicase -
  OG331_RS15220 (OG331_15050) - 3334512..3335336 (-) 825 WP_406196274.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28038.80 Da        Isoelectric Point: 7.0666

>NTDB_id=665107 OG331_RS15210 WP_328878695.1 3331024..3331803(+) (dinR/lexA) [Streptomyces sp. NBC_01017]
MTTTADSATITAQDRSQGRLEPVHAMNEAMSPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTTGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=665107 OG331_RS15210 WP_328878695.1 3331024..3331803(+) (dinR/lexA) [Streptomyces sp. NBC_01017]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAGTCCCGAGGGACACAAGCGCTCCCTGCCGGGCCGACCCCCCGGCATCCGGGCGGACAGTTCAGGGCTCA
CCGACCGGCAGCGCCGCGTGATCGAAGTCATCAGGGATTCCGTGCAGCGGCGTGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACGTCCTCGGTCGCCCACCAGCTGATGGCACTGGAGCGCAAGGGATTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTATGAAGTGCGAGGCTCCGACCAGGCCGCCTCCGTGCAGCCCACGGACACCACAGGCA
AGCCCGCCGCGTCGTACGTGCCGCTGGTCGGCCGCATCGCCGCCGGTGGACCGATCCTCGCTGAGGAGTCGGTCGAGGAC
GTCTTCCCTCTCCCCCGACAGCTGGTCGGCGACGGCGAGCTCTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCCATCTGCGACGGCGACTGGGTCACCGTCAGGCGCCAGCCGGTTGCGGAGAACGGCGACATCGTCGCGGCCATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACGCTGCGTACGAGCCG
ATTCCCGGCGACGACGCGACCATCCTGGGCAAGGTGGTGGCAGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375