Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MOV58_RS00190 Genome accession   NZ_CP093539
Coordinates   40775..42400 (-) Length   541 a.a.
NCBI ID   WP_145462987.1    Uniprot ID   -
Organism   Staphylococcus hominis strain C5     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 34066..42367 40775..42400 flank -1592


Gene organization within MGE regions


Location: 34066..42400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOV58_RS00155 (MOV58_00155) mecA 34066..36075 (-) 2010 WP_063852655.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  MOV58_RS00160 (MOV58_00160) - 36172..37158 (+) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  MOV58_RS00165 (MOV58_00165) - 37130..37390 (+) 261 WP_001549961.1 type I restriction enzyme endonuclease domain-containing protein -
  MOV58_RS00170 (MOV58_00170) - 37381..38988 (-) 1608 Protein_31 IS1182 family transposase -
  MOV58_RS00175 (MOV58_00175) - 39040..39546 (-) 507 WP_001092195.1 DUF1643 domain-containing protein -
  MOV58_RS00180 (MOV58_00180) - 39561..39872 (-) 312 WP_001024803.1 DUF960 family protein -
  MOV58_RS00185 (MOV58_00185) - 39959..40309 (-) 351 WP_000859157.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MOV58_RS00190 (MOV58_00190) ccrB 40775..42400 (-) 1626 WP_145462987.1 recombinase family protein Machinery gene

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62219.08 Da        Isoelectric Point: 9.7604

>NTDB_id=665073 MOV58_RS00190 WP_145462987.1 40775..42400(-) (ccrB) [Staphylococcus hominis strain C5]
MNEMKKKRIGAYIRVSTERQVEGYSVDGQITQIEQFCQFNGYDLVDIYADRGISGKSMNRPALQRMLQDAKNGKLDCVIV
YKINRLARNTSNLLTIVEELHRQNVEFFSLSERMEVKNSTGKLLLNILASFSEFERNTILENIYTGQHQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYSKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDAPVIAEGKHIPIIGKELWNKVQARKKQVSQKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAELNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLASTLKPTIHQYETQLNDITNQINQLKQQQNQEKPSYDTKQIAALLQQIFQNVESMDKAQLKA
LYLTVIDRIDIRKDGNHKKQFFVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=665073 MOV58_RS00190 WP_145462987.1 40775..42400(-) (ccrB) [Staphylococcus hominis strain C5]
ATGAATGAAATGAAGAAGAAAAGAATCGGAGCGTACATTCGCGTGTCCACAGAGAGACAAGTGGAAGGTTATAGTGTAGA
TGGGCAAATTACACAAATAGAGCAATTTTGCCAATTTAATGGTTATGACCTCGTTGATATATACGCAGATCGAGGTATTT
CTGGAAAATCTATGAACCGCCCTGCACTACAGCGCATGTTACAAGACGCAAAAAATGGAAAGTTAGACTGTGTGATTGTT
TATAAAATAAATCGTTTAGCACGTAATACTTCCAACCTACTAACAATAGTCGAAGAACTACATCGCCAAAATGTTGAATT
TTTTAGCCTGTCTGAACGCATGGAAGTCAAAAATTCGACCGGCAAACTATTATTAAATATACTTGCAAGTTTCTCCGAAT
TTGAAAGAAATACAATTTTAGAGAATATTTACACCGGTCAACATCAAAGAGCTTTAGAGGGCTATTATCAAGGAAATCTT
CCATTAGGATATAATAACATACCTGATAATAAGAAAGAATTAATGATTAACCAACATGAAGCTAATATTGTTAAATACAT
TTTTGAATCTTATTCCAAAGGTCATGGTTATCGTAAAATTGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATCCTCTCTAATCCATTTTATATAGGTAAAATTCAATTCGCAAAATAT
AAGGATTGGAACGATAAGCGTCGTAAAGGATTGAATGATGCACCTGTCATTGCCGAAGGTAAACACATCCCTATTATTGG
CAAAGAATTATGGAATAAAGTCCAAGCACGTAAAAAACAAGTCAGTCAAAAACCACAAGTTCATGGTAAAGGAACAAATC
TTTTGACAGGAATAATTTTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAATACACTCAAAGACGGT
ACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGTTAG
AGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGAACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAGCATCTACGCTCAAACCAACCATTCA
TCAATATGAAACACAACTCAATGACATTACAAACCAAATTAATCAACTCAAGCAGCAACAAAATCAAGAAAAACCCTCTT
ACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGCACAACTCAAAGCA
TTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAGCAATTCTTTGTTACACTAAAACT
TAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTTCTCAGCACTTCGTCTTTGTTTTTGC
CTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Recombinase (Recombinase)

(179-279)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(294-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

77.491

100

0.776