Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG372_RS14205 Genome accession   NZ_CP108681
Coordinates   3180633..3181613 (-) Length   326 a.a.
NCBI ID   WP_328377393.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01020     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3175633..3186613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG372_RS14190 (OG372_14215) - 3176825..3177571 (+) 747 WP_266856024.1 DUF6227 family protein -
  OG372_RS14195 (OG372_14220) - 3177766..3178749 (-) 984 WP_406068991.1 helix-turn-helix transcriptional regulator -
  OG372_RS14200 (OG372_14225) - 3178962..3180485 (+) 1524 WP_406072388.1 MFS transporter -
  OG372_RS14205 (OG372_14230) rpoS 3180633..3181613 (-) 981 WP_328377393.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG372_RS14210 (OG372_14235) - 3181797..3182324 (+) 528 WP_266855999.1 GNAT family N-acetyltransferase -
  OG372_RS14215 (OG372_14240) - 3182509..3183288 (-) 780 WP_266855997.1 dioxygenase -
  OG372_RS14220 (OG372_14245) - 3183380..3183895 (+) 516 WP_266855995.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG372_RS14225 (OG372_14250) - 3184022..3185551 (-) 1530 WP_266855993.1 MFS transporter -
  OG372_RS14230 (OG372_14255) - 3185901..3186539 (-) 639 WP_266855992.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36475.12 Da        Isoelectric Point: 4.9545

>NTDB_id=665048 OG372_RS14205 WP_328377393.1 3180633..3181613(-) (rpoS) [Streptomyces sp. NBC_01020]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYAQQVLDGSVQSEAGGASHEEL
EALVAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDAKPQRVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGRLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=665048 OG372_RS14205 WP_328377393.1 3180633..3181613(-) (rpoS) [Streptomyces sp. NBC_01020]
ATGGCAACCCGTGCCGTCGCCCGTCGATCCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATCGCACGTACGCCACTGCTCGACGCCGAAAAAGAGGTCGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCAGGTTCTTGACGGTTCCGTGCAGAGTGAGGCGGGTGGGGCCTCGCATGAGGAGCTG
GAGGCGCTGGTTGCCGCCGGGGAGCGCGCCAAGGACGTCTTCATCCGGTCCAACCTGCGGCTGGTCGTCGCTGTGGCCCG
CCGCTACCCGCGAGCCGGTCTGCCGCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCCACGTATGCGACCTGGTGGATCCGGCAGGCCATCACCCGGTCGATAGCCGAT
CAGTCGCGCACCATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGTCCAGCGCGAGTTCAACCG
CGAGCACGGCCGCGACCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACGCCAAGCCGCAGCGTGTGAGCGATGTGCTGG
ACTGGGCCCGCGACCCGGTCAGTCTGAACATGCCGGTGGACGACCAGGGCGAGACGCAGTTCGGTGACCTCCTGGAGGAC
ACGTCGGCGGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGCGAGGAGCTCGACGAACTGATCGGCAGGCTCGA
TCACCGCACCGCTTCGATCATCAAGATGCGCTTCGGTATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGGCTGACACGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCGACGACGTG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

92.025

0.371