Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG372_RS07350 Genome accession   NZ_CP108681
Coordinates   1624498..1625328 (-) Length   276 a.a.
NCBI ID   WP_266858249.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01020     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1619498..1630328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG372_RS07325 (OG372_07350) - 1620148..1620579 (-) 432 WP_328376335.1 Rid family hydrolase -
  OG372_RS07330 (OG372_07355) - 1620576..1621703 (-) 1128 WP_266858253.1 mandelate racemase/muconate lactonizing enzyme family protein -
  OG372_RS07335 (OG372_07360) - 1621807..1622595 (-) 789 WP_405755796.1 creatininase family protein -
  OG372_RS07340 (OG372_07365) - 1622646..1623614 (+) 969 WP_405750153.1 ROK family protein -
  OG372_RS07345 (OG372_07370) - 1623641..1624501 (-) 861 WP_266858251.1 ATP-binding cassette domain-containing protein -
  OG372_RS07350 (OG372_07375) amiE 1624498..1625328 (-) 831 WP_266858249.1 ABC transporter ATP-binding protein Regulator
  OG372_RS07355 (OG372_07380) - 1625325..1626233 (-) 909 WP_266858247.1 ABC transporter permease -
  OG372_RS07360 (OG372_07385) - 1626284..1627282 (-) 999 WP_266858246.1 ABC transporter permease -
  OG372_RS07365 (OG372_07390) - 1627279..1628853 (-) 1575 WP_406068063.1 ABC transporter substrate-binding protein -
  OG372_RS07370 (OG372_07395) - 1628908..1629750 (+) 843 WP_406068065.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 29961.16 Da        Isoelectric Point: 5.1983

>NTDB_id=665032 OG372_RS07350 WP_266858249.1 1624498..1625328(-) (amiE) [Streptomyces sp. NBC_01020]
MKPTPAPTPEPADPLLRINDLSVDFRLESSTVHAVRGVSLEVDAGETLAVVGESGSGKTATALSVLRLNPAPPCVYSGGE
ILFDGHDLLALSEKELGRIRGHDIAMVFQDPMTSLDPLQRVGSQVAEVLRHHQGLSRSEAREAAVAALDEVGIPDPERRY
RQYPHELSGGLRQRVMIATALVARPRVLIADEPTTALDVTVQRQILDLLVELRQRHGMAVVLITHDLGVVAETADRVAVM
NRGRVVETGDVLDVFAHPADDYTRRLLDATPRLEPA

Nucleotide


Download         Length: 831 bp        

>NTDB_id=665032 OG372_RS07350 WP_266858249.1 1624498..1625328(-) (amiE) [Streptomyces sp. NBC_01020]
ATGAAGCCCACCCCCGCGCCCACCCCCGAACCCGCAGATCCGCTGCTCCGCATCAACGACCTCAGCGTCGATTTCCGGCT
CGAAAGCTCCACCGTGCACGCCGTCCGGGGTGTCTCCCTGGAGGTCGACGCCGGGGAGACGCTCGCCGTCGTCGGCGAGT
CCGGCAGCGGGAAGACGGCCACCGCACTCTCCGTACTGCGCCTCAACCCGGCGCCGCCCTGCGTCTACAGCGGCGGCGAG
ATCCTCTTCGACGGCCACGACCTGCTCGCGCTCTCCGAGAAGGAGCTCGGCCGGATCAGGGGCCATGACATCGCCATGGT
CTTCCAGGACCCGATGACCAGCCTCGACCCGCTCCAACGGGTCGGCAGCCAGGTCGCCGAAGTGCTCAGGCACCACCAGG
GGCTGTCCAGGTCCGAAGCCCGGGAGGCCGCCGTCGCGGCCCTGGACGAGGTCGGCATCCCCGACCCGGAACGCCGCTAC
CGGCAGTACCCGCACGAGCTCTCCGGCGGGCTGCGCCAGCGCGTGATGATCGCGACCGCGCTGGTCGCCAGGCCGCGGGT
GCTCATCGCCGACGAGCCGACCACCGCCCTCGACGTCACCGTGCAGCGGCAGATCCTCGATCTCCTGGTCGAGCTGCGGC
AACGGCACGGCATGGCCGTCGTCCTCATCACCCACGACCTCGGCGTGGTGGCCGAGACCGCCGACCGGGTCGCCGTCATG
AACCGCGGCCGGGTCGTGGAGACCGGCGACGTCCTGGACGTCTTCGCGCACCCGGCGGACGACTACACCCGCCGGCTCCT
GGACGCCACCCCCCGATTGGAGCCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(36-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.881

97.101

0.475
  amiE Streptococcus thermophilus LMG 18311

47.761

97.101

0.464
  amiE Streptococcus thermophilus LMD-9

47.761

97.101

0.464
  oppD Streptococcus mutans UA159

46.97

95.652

0.449
  amiF Streptococcus salivarius strain HSISS4

38.202

96.739

0.37
  amiF Streptococcus thermophilus LMG 18311

37.828

96.739

0.366
  amiF Streptococcus thermophilus LMD-9

37.453

96.739

0.362