Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG393_RS19150 Genome accession   NZ_CP108677
Coordinates   4301580..4302578 (+) Length   332 a.a.
NCBI ID   WP_327375889.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01216     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4296580..4307578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG393_RS19125 (OG393_19155) - 4296751..4297410 (+) 660 WP_327375885.1 TetR/AcrR family transcriptional regulator -
  OG393_RS19130 (OG393_19160) - 4297518..4299050 (+) 1533 WP_327375886.1 MFS transporter -
  OG393_RS19135 (OG393_19165) - 4299131..4299632 (-) 502 Protein_3776 HD domain-containing protein -
  OG393_RS19140 (OG393_19170) - 4299786..4300289 (-) 504 WP_327375887.1 MarR family transcriptional regulator -
  OG393_RS19145 (OG393_19175) - 4300401..4301189 (+) 789 WP_327375888.1 class III extradiol ring-cleavage dioxygenase -
  OG393_RS19150 (OG393_19180) rpoS 4301580..4302578 (+) 999 WP_327375889.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG393_RS19155 (OG393_19185) - 4302639..4303598 (-) 960 WP_327375890.1 YafY family protein -
  OG393_RS19160 (OG393_19190) - 4303661..4305229 (+) 1569 WP_327375891.1 MFS transporter -
  OG393_RS19165 (OG393_19195) - 4305463..4306572 (+) 1110 WP_327375892.1 glycosyltransferase -
  OG393_RS19170 (OG393_19200) - 4306721..4307497 (-) 777 WP_327375893.1 DUF6227 family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37205.96 Da        Isoelectric Point: 4.9833

>NTDB_id=664995 OG393_RS19150 WP_327375889.1 4301580..4302578(+) (rpoS) [Streptomyces sp. NBC_01216]
MATRAVARRSSATRGSSRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEVESEAGG
ATREELEALVAESERAKDVFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELDSKPERVVDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIDKLDHRTASIIRMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KMARDTGFDAVA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=664995 OG393_RS19150 WP_327375889.1 4301580..4302578(+) (rpoS) [Streptomyces sp. NBC_01216]
ATGGCAACCCGTGCCGTCGCCCGCCGTTCGTCCGCCACGCGCGGAAGCAGCCGGGCAAGCAGCGTTCGCGCCGTGGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCCCGCACGCCCCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCCCAGACCATCGAGGCCGGCGTGTACGCCCGGCAGATCCTGGACGGCGAGGTGGAGAGCGAGGCGGGCGGG
GCGACGCGCGAGGAGCTCGAAGCGCTGGTCGCCGAGAGCGAGCGGGCCAAGGACGTCTTCATCAAGTCCAACCTCCGGCT
CGTCGTGGCCGTCGCCCGCCGCTACCCGCGCAGCGGGCTGCCGCTGCTCGACCTGATCCAGGAGGGGAACGCGGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCCACGTGGTGGATACGTCAGGCCATC
ACACGGTCCATAGCCGACCAGTCCCGCACCATCCGGCTTCCCGTGCACCTCGTCGAGGAACTCGGACGGATCCGGCGCGT
CCAGCGCGAGTTCAACCGCGAACACGGCCGGGAGCCGGAGCCGGCGGAGATCGCGGCGGAGCTGGACTCGAAGCCCGAGC
GCGTGGTGGACGTCCTCGACTGGGCGCGCGACCCCGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACGCAGTTC
GGCGACCTGCTGGAGGACACGTCGGCGGTGTCGCCCGAGCAGTCGGTGCTCACGCTGTTGCGCAGCGAGGAGCTCGACGA
CCTGATCGACAAGCTCGACCACCGCACCGCGTCGATCATCCGCATGCGGTACGGCATCGAGGACGGCCGGGAGCGGACCC
TGACGGAGGTCGGCAAGGAACACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAACTCAAG
AAGATGGCGCGGGACACCGGCTTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

90.361

0.364