Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MO409_RS17410 Genome accession   NZ_CP093501
Coordinates   3510545..3511141 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain VA04     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3505545..3516141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO409_RS17395 (MO409_17375) helD 3505753..3507807 (-) 2055 WP_085855787.1 DNA helicase IV -
  MO409_RS17400 (MO409_17380) - 3507932..3508378 (+) 447 WP_002898425.1 YccF domain-containing protein -
  MO409_RS17405 (MO409_17385) yccS 3508396..3510531 (+) 2136 WP_049118083.1 YccS family putative transporter -
  MO409_RS17410 (MO409_17390) sxy/tfoX 3510545..3511141 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  MO409_RS17415 (MO409_17395) sulA 3511490..3511999 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  MO409_RS17420 (MO409_17400) ompA 3512352..3513422 (+) 1071 WP_002898408.1 porin OmpA -
  MO409_RS17425 (MO409_17405) matP 3513554..3514006 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  MO409_RS17430 (MO409_17410) - 3514192..3515949 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=664988 MO409_RS17410 WP_004179217.1 3510545..3511141(-) (sxy/tfoX) [Klebsiella pneumoniae strain VA04]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=664988 MO409_RS17410 WP_004179217.1 3510545..3511141(-) (sxy/tfoX) [Klebsiella pneumoniae strain VA04]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51