Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG316_RS42600 Genome accession   NZ_CP108674
Coordinates   9617286..9618308 (-) Length   340 a.a.
NCBI ID   WP_326733677.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01022     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9612286..9623308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG316_RS42580 (OG316_42650) - 9612875..9614404 (-) 1530 WP_326733681.1 FAD-dependent oxidoreductase -
  OG316_RS42585 (OG316_42655) - 9614474..9615166 (-) 693 WP_326733680.1 TetR/AcrR family transcriptional regulator -
  OG316_RS42590 (OG316_42660) - 9615284..9615700 (-) 417 WP_326733679.1 lytic polysaccharide monooxygenase -
  OG316_RS42595 (OG316_42665) - 9615732..9616826 (-) 1095 WP_326733678.1 lytic polysaccharide monooxygenase -
  OG316_RS42600 (OG316_42670) cytR 9617286..9618308 (-) 1023 WP_326733677.1 LacI family DNA-binding transcriptional regulator Regulator
  OG316_RS42605 (OG316_42675) - 9618776..9620149 (+) 1374 WP_326733676.1 cellulase family glycosylhydrolase -
  OG316_RS42610 (OG316_42680) - 9620212..9620796 (-) 585 WP_326733675.1 NUDIX hydrolase -
  OG316_RS42615 - 9620868..9622559 (-) 1692 WP_326733674.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36776.99 Da        Isoelectric Point: 6.5158

>NTDB_id=664959 OG316_RS42600 WP_326733677.1 9617286..9618308(-) (cytR) [Streptomyces sp. NBC_01022]
MLKRSSGTPTLEEVAALAGVGRGTVSRVINNASGVKASTRRAVQRAIDELDYVPNLAARSLAGRRADAVALVMTQTDWRL
FGEPFFSEVARAVADALTEADVQLLLTLVRTDAERQRLVKYVRGGRIDGVLLMSVRAEDRLPDMLADAGLPTVLLGRRSS
EERVTYVDADNVGGARAAVAHLTRAGRKAIAAITGPPEMYAAQCRLRGYREALGDAGIDEVPSLVTQGDFTEASGRRAMT
GLIKRHPEIDAVFAASDSMAAGALTALHAAGRRVPQDVAVIGFDDFELAEQTEPPLTTVRQPMEEIGRTMVRLLLEEMDQ
PQVAWRHAILRTQLVVREST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=664959 OG316_RS42600 WP_326733677.1 9617286..9618308(-) (cytR) [Streptomyces sp. NBC_01022]
ATGCTGAAGCGAAGTTCCGGCACACCGACGCTGGAGGAAGTGGCCGCCCTTGCCGGGGTGGGGCGGGGCACGGTCTCCCG
GGTGATCAACAACGCGTCGGGGGTCAAGGCGTCCACACGGCGCGCCGTGCAGCGCGCCATCGACGAACTGGACTACGTGC
CCAATCTGGCCGCACGCTCACTGGCCGGACGGCGCGCGGACGCCGTCGCACTGGTGATGACACAGACGGACTGGCGGCTG
TTCGGCGAGCCGTTCTTCTCGGAGGTCGCGCGGGCGGTCGCGGATGCCCTGACCGAAGCGGACGTGCAGCTCCTGCTCAC
CCTCGTCCGTACCGACGCCGAGCGTCAGCGGCTCGTGAAGTATGTGCGGGGCGGCCGGATAGACGGGGTGCTGTTGATGT
CCGTACGCGCCGAGGACCGACTGCCGGACATGCTCGCCGACGCCGGGCTGCCCACGGTGTTGCTCGGCAGACGTTCCAGC
GAGGAGCGGGTGACTTATGTGGACGCGGACAATGTCGGCGGCGCGCGGGCGGCGGTCGCACATCTGACGCGCGCCGGACG
GAAGGCCATCGCCGCGATCACTGGCCCGCCCGAGATGTACGCCGCCCAGTGCAGGCTTCGCGGCTACCGGGAAGCACTCG
GCGATGCGGGGATCGACGAGGTGCCGTCCCTGGTCACGCAGGGAGACTTCACCGAGGCGAGCGGGCGGCGGGCGATGACC
GGGCTCATCAAACGGCACCCGGAGATCGACGCCGTCTTCGCCGCGTCGGACAGCATGGCAGCCGGGGCTCTGACCGCCCT
GCACGCGGCGGGGCGCCGGGTCCCGCAGGATGTGGCGGTGATCGGATTCGACGACTTCGAGCTGGCCGAGCAGACCGAGC
CGCCGCTCACGACCGTCCGTCAGCCGATGGAGGAGATCGGCCGGACCATGGTGCGGCTGCTGCTGGAGGAGATGGACCAG
CCGCAGGTGGCATGGCGCCACGCGATCCTGCGGACGCAGCTGGTGGTGCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(10-55)

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.168

99.706

0.371