Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG316_RS34250 Genome accession   NZ_CP108674
Coordinates   7647477..7648271 (-) Length   264 a.a.
NCBI ID   WP_219573501.1    Uniprot ID   A0ABY9IM67
Organism   Streptomyces sp. NBC_01022     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7642477..7653271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG316_RS34240 (OG316_34295) - 7643218..7645371 (+) 2154 WP_326739269.1 IucA/IucC family protein -
  OG316_RS34245 (OG316_34300) - 7645422..7647392 (+) 1971 WP_326739270.1 ATP-dependent DNA helicase -
  OG316_RS34250 (OG316_34305) dinR/lexA 7647477..7648271 (-) 795 WP_219573501.1 transcriptional repressor LexA Regulator
  OG316_RS34255 (OG316_34310) nrdR 7648828..7649340 (+) 513 WP_148021323.1 transcriptional regulator NrdR -
  OG316_RS34260 (OG316_34315) - 7649499..7652405 (+) 2907 WP_326739271.1 vitamin B12-dependent ribonucleotide reductase -
  OG316_RS34265 (OG316_34320) - 7652547..7653083 (-) 537 WP_326739272.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28622.39 Da        Isoelectric Point: 6.9854

>NTDB_id=664945 OG316_RS34250 WP_219573501.1 7647477..7648271(-) (dinR/lexA) [Streptomyces sp. NBC_01022]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=664945 OG316_RS34250 WP_219573501.1 7647477..7648271(-) (dinR/lexA) [Streptomyces sp. NBC_01022]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAGCCCGCGCGCCCAGCGCGCTCGCTGCCCGGACGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTACAACGGCGGGGTTACCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGCACGTCCTCCGTCGCACATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCCCATCGCCCCCGGGCGTACGAGGTGCGCGGTTCGGACCAGCCGAGCACACAGCCCA
CGGACACCACCGGCAAGCCCGCGGCATCGTACGTGCCGTTGGTCGGCCGGATCGCGGCCGGTGGGCCGATCCTCGCCGAG
GAATCGGTCGAGGACGTGTTCCCCCTCCCCCGCCAGCTGGTCGGGGACGGAGAGCTCTTCGTGCTGAAGGTTGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGTGACGGGGATTGGGTCACCGTGCGACGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGTGAGGACGGCCATGTGTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTGGCGGTGCTCCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371