Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG316_RS32880 Genome accession   NZ_CP108674
Coordinates   7368957..7370165 (+) Length   402 a.a.
NCBI ID   WP_326740790.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7363957..7375165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG316_RS32865 (OG316_32920) - 7364862..7366280 (+) 1419 WP_326739022.1 sugar porter family MFS transporter -
  OG316_RS32870 (OG316_32925) - 7366351..7367316 (-) 966 WP_326739023.1 LLM class flavin-dependent oxidoreductase -
  OG316_RS32875 (OG316_32930) - 7367380..7368771 (-) 1392 WP_326739024.1 cytosine permease -
  OG316_RS32880 (OG316_32935) pilA 7368957..7370165 (+) 1209 WP_326740790.1 signal recognition particle-docking protein FtsY Machinery gene
  OG316_RS32885 (OG316_32940) - 7370232..7370891 (-) 660 WP_326739025.1 bifunctional DNA primase/polymerase -
  OG316_RS32890 (OG316_32945) - 7371316..7372791 (+) 1476 WP_326739026.1 hypothetical protein -
  OG316_RS32895 (OG316_32950) - 7373162..7374514 (+) 1353 WP_326739027.1 ammonium transporter -
  OG316_RS32900 (OG316_32955) - 7374511..7374849 (+) 339 WP_136330688.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42233.26 Da        Isoelectric Point: 4.5343

>NTDB_id=664940 OG316_RS32880 WP_326740790.1 7368957..7370165(+) (pilA) [Streptomyces sp. NBC_01022]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPRDASRRTIEEVGLPPEEAAGKAPE
TAEPEAPAAPALDVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRE
RVRVLGTRTPEELRKLLREELLTLLGTDFDRAVKTEGGAETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADT
FRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLD
EILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDALI
GD

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=664940 OG316_RS32880 WP_326740790.1 7368957..7370165(+) (pilA) [Streptomyces sp. NBC_01022]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAGGCCG
AAACGCCGCGCGACGCATCGCGCCGCACCATCGAGGAGGTCGGCCTTCCGCCCGAGGAGGCCGCCGGGAAGGCCCCGGAA
ACCGCCGAGCCGGAGGCGCCCGCAGCCCCCGCGCTGGACGTCCCCGAGCCCACCGCCGGCCGTCTCGTACGGCTCCGGGC
CCGCCTCGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGACAACCTCGACGAGGACACCT
GGGAGGAGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCGCCCCCACCCAGGAACTGGTCGAACGGCTCCGGGAG
CGCGTCCGCGTCCTCGGCACCCGTACCCCCGAGGAGCTGCGGAAGCTGCTGCGTGAGGAGCTCCTCACTCTTCTCGGCAC
CGACTTCGACCGCGCGGTCAAGACGGAGGGCGGCGCCGAAACCCCCGGCGTCGTGATGGTCGTCGGCGTCAACGGCACCG
GCAAGACCACCACGACGGGCAAGCTGGCCCGGGTGCTGGTGGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGACACC
TTCCGTGCCGCCGCCGCCGATCAGCTCCAGACCTGGGGCGAGCGCGTCGGTGCCCGCACCGTGCGCGGACCCGAGGGCGG
CGACCCGGCGTCGATCGCCTTCGACGCCGTGAAGGAAGGGATCGCCGAGGGCGCCGACGTCGTCCTCATCGACACGGCGG
GCCGGCTGCACACCAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGACCGCTCGAC
GAGATCCTGCTCGTCCTCGATGCCACCACCGGGCAGAACGGCCTGGTGCAGGCACGGGTGTTCGCCGAGGTCGTCGACAT
CACCGGCATCGTCCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTGGGCGTTC
CGGTGAAGCTCGTCGGGCTCGGCGAGGGCCCGGACGATCTGGCTCCGTTCGAGCCGGAGGCGTTCGTGGACGCCCTGATC
GGGGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(203-400)

SRP54-type protein, helical bundle domain (SRP54_N)

(116-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.059

87.811

0.378